diff --git a/doc/basics.ipynb b/doc/basics.ipynb
index a64031c..2d21e49 100644
--- a/doc/basics.ipynb
+++ b/doc/basics.ipynb
@@ -95,8 +95,8 @@
     "\n",
     "This can be done with any of these calls: \n",
     "- .fit(data).dimension_\n",
-    "- .fit(data).predict() \n",
-    "- .fit_predict(data)"
+    "- .fit(data).transform() \n",
+    "- .fit_transform(data)"
    ],
    "cell_type": "markdown",
    "metadata": {}
@@ -130,15 +130,15 @@
     "\n",
     "To compute local ID call either: \n",
     "- .fit\\_pw(data).dimension\\_pw_\n",
-    "- .fit_pw(data).predict_pw()\n",
-    "- .fit_predict_pw(data)\n",
+    "- .fit_pw(data).transform_pw()\n",
+    "- .fit_transform_pw(data)\n",
     "\n",
     "Several estimators also naturally compute the distribution of local ID to derive the global ID estimates. \n",
     "\n",
     "These estimators do not have a .fit\\_pw() method since .fit() already computes local estimates and you can simply call : \n",
     "- .fit(data).dimension\\_pw_\n",
-    "- .fit(data).predict_pw()\n",
-    "- .fit_predict_pw(data)\n"
+    "- .fit(data).transform_pw()\n",
+    "- .fit_transform_pw(data)\n"
    ],
    "cell_type": "markdown",
    "metadata": {}
diff --git a/doc/skdim.datasets.BenchmarkManifolds.generate.rst b/doc/skdim.datasets.BenchmarkManifolds.generate.rst
index 7edd073..28d86b7 100644
--- a/doc/skdim.datasets.BenchmarkManifolds.generate.rst
+++ b/doc/skdim.datasets.BenchmarkManifolds.generate.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L383-L436
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L374-L427
 
 
 
diff --git a/doc/skdim.datasets.BenchmarkManifolds.rst b/doc/skdim.datasets.BenchmarkManifolds.rst
index 3e2ca0b..bbe1d7e 100644
--- a/doc/skdim.datasets.BenchmarkManifolds.rst
+++ b/doc/skdim.datasets.BenchmarkManifolds.rst
@@ -20,8 +20,4 @@ skdim.datasets.BenchmarkManifolds
    
       ~skdim.datasets.BenchmarkManifolds.generate
    
-   
-
-   
-   
    
\ No newline at end of file
diff --git a/doc/skdim.datasets.hyperBall.rst b/doc/skdim.datasets.hyperBall.rst
index 476bd87..e4749eb 100644
--- a/doc/skdim.datasets.hyperBall.rst
+++ b/doc/skdim.datasets.hyperBall.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L38-L69
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L38-L69
 
 
 
diff --git a/doc/skdim.datasets.hyperSphere.rst b/doc/skdim.datasets.hyperSphere.rst
index 7b9433e..a4971e0 100644
--- a/doc/skdim.datasets.hyperSphere.rst
+++ b/doc/skdim.datasets.hyperSphere.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L72-L95
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L72-L95
 
 
 
diff --git a/doc/skdim.datasets.hyperTwinPeaks.rst b/doc/skdim.datasets.hyperTwinPeaks.rst
index d4bed8b..bc72427 100644
--- a/doc/skdim.datasets.hyperTwinPeaks.rst
+++ b/doc/skdim.datasets.hyperTwinPeaks.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L98-L122
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L98-L122
 
 
 
diff --git a/doc/skdim.datasets.lineDiskBall.rst b/doc/skdim.datasets.lineDiskBall.rst
index 0eeae3d..29657e9 100644
--- a/doc/skdim.datasets.lineDiskBall.rst
+++ b/doc/skdim.datasets.lineDiskBall.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L125-L187
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L125-L187
 
 
 
diff --git a/doc/skdim.datasets.swissRoll3Sph.rst b/doc/skdim.datasets.swissRoll3Sph.rst
index 0b736f8..858980a 100644
--- a/doc/skdim.datasets.swissRoll3Sph.rst
+++ b/doc/skdim.datasets.swissRoll3Sph.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L190-L245
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L190-L245
 
 
 
diff --git a/doc/skdim.id.CorrInt.fit.rst b/doc/skdim.id.CorrInt.fit.rst
index f214f37..f4a5d7c 100644
--- a/doc/skdim.id.CorrInt.fit.rst
+++ b/doc/skdim.id.CorrInt.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L61-L87
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L57-L83
 
 
 
diff --git a/doc/skdim.id.CorrInt.fit_pw.rst b/doc/skdim.id.CorrInt.fit_pw.rst
index e3c0512..fe1a916 100644
--- a/doc/skdim.id.CorrInt.fit_pw.rst
+++ b/doc/skdim.id.CorrInt.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.CorrInt.fit_transform.rst b/doc/skdim.id.CorrInt.fit_transform.rst
new file mode 100644
index 0000000..030d9ab
--- /dev/null
+++ b/doc/skdim.id.CorrInt.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L192-L205
+
+
+
+skdim.id.CorrInt.fit\_transform
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: CorrInt.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.CorrInt.fit_transform_pw.rst b/doc/skdim.id.CorrInt.fit_transform_pw.rst
new file mode 100644
index 0000000..92d920e
--- /dev/null
+++ b/doc/skdim.id.CorrInt.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L284-L335
+
+
+
+skdim.id.CorrInt.fit\_transform\_pw
+===================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: CorrInt.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.CorrInt.get_params.rst b/doc/skdim.id.CorrInt.get_params.rst
index e4ab7a0..702f9d4 100644
--- a/doc/skdim.id.CorrInt.get_params.rst
+++ b/doc/skdim.id.CorrInt.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.CorrInt.rst b/doc/skdim.id.CorrInt.rst
index 06ed3a4..969ba56 100644
--- a/doc/skdim.id.CorrInt.rst
+++ b/doc/skdim.id.CorrInt.rst
@@ -19,16 +19,12 @@ skdim.id.CorrInt
       :toctree: .
    
       ~skdim.id.CorrInt.fit
-      ~skdim.id.CorrInt.fit_predict
-      ~skdim.id.CorrInt.fit_predict_pw
       ~skdim.id.CorrInt.fit_pw
+      ~skdim.id.CorrInt.fit_transform
+      ~skdim.id.CorrInt.fit_transform_pw
       ~skdim.id.CorrInt.get_params
-      ~skdim.id.CorrInt.predict
-      ~skdim.id.CorrInt.predict_pw
       ~skdim.id.CorrInt.set_params
-   
-   
-
-   
+      ~skdim.id.CorrInt.transform
+      ~skdim.id.CorrInt.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.CorrInt.set_params.rst b/doc/skdim.id.CorrInt.set_params.rst
index 85e0d8c..0b796e8 100644
--- a/doc/skdim.id.CorrInt.set_params.rst
+++ b/doc/skdim.id.CorrInt.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.CorrInt.transform.rst b/doc/skdim.id.CorrInt.transform.rst
new file mode 100644
index 0000000..701e504
--- /dev/null
+++ b/doc/skdim.id.CorrInt.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L177-L190
+
+
+
+skdim.id.CorrInt.transform
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: CorrInt.transform
\ No newline at end of file
diff --git a/doc/skdim.id.CorrInt.transform_pw.rst b/doc/skdim.id.CorrInt.transform_pw.rst
new file mode 100644
index 0000000..7ba529a
--- /dev/null
+++ b/doc/skdim.id.CorrInt.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L255-L282
+
+
+
+skdim.id.CorrInt.transform\_pw
+==============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: CorrInt.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.DANCo.fit.rst b/doc/skdim.id.DANCo.fit.rst
index 02d3d8c..17b53bb 100644
--- a/doc/skdim.id.DANCo.fit.rst
+++ b/doc/skdim.id.DANCo.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_DANCo.py#L92-L134
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L89-L132
 
 
 
diff --git a/doc/skdim.id.DANCo.fit_pw.rst b/doc/skdim.id.DANCo.fit_pw.rst
index 128be1b..af9e39a 100644
--- a/doc/skdim.id.DANCo.fit_pw.rst
+++ b/doc/skdim.id.DANCo.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_DANCo.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.DANCo.fit_transform.rst b/doc/skdim.id.DANCo.fit_transform.rst
new file mode 100644
index 0000000..e551111
--- /dev/null
+++ b/doc/skdim.id.DANCo.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L192-L205
+
+
+
+skdim.id.DANCo.fit\_transform
+=============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: DANCo.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.DANCo.fit_transform_pw.rst b/doc/skdim.id.DANCo.fit_transform_pw.rst
new file mode 100644
index 0000000..543d758
--- /dev/null
+++ b/doc/skdim.id.DANCo.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L284-L335
+
+
+
+skdim.id.DANCo.fit\_transform\_pw
+=================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: DANCo.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.DANCo.get_params.rst b/doc/skdim.id.DANCo.get_params.rst
index 401226f..6482b38 100644
--- a/doc/skdim.id.DANCo.get_params.rst
+++ b/doc/skdim.id.DANCo.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_DANCo.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.DANCo.rst b/doc/skdim.id.DANCo.rst
index 056b768..ffe27b0 100644
--- a/doc/skdim.id.DANCo.rst
+++ b/doc/skdim.id.DANCo.rst
@@ -19,16 +19,12 @@ skdim.id.DANCo
       :toctree: .
    
       ~skdim.id.DANCo.fit
-      ~skdim.id.DANCo.fit_predict
-      ~skdim.id.DANCo.fit_predict_pw
       ~skdim.id.DANCo.fit_pw
+      ~skdim.id.DANCo.fit_transform
+      ~skdim.id.DANCo.fit_transform_pw
       ~skdim.id.DANCo.get_params
-      ~skdim.id.DANCo.predict
-      ~skdim.id.DANCo.predict_pw
       ~skdim.id.DANCo.set_params
-   
-   
-
-   
+      ~skdim.id.DANCo.transform
+      ~skdim.id.DANCo.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.DANCo.set_params.rst b/doc/skdim.id.DANCo.set_params.rst
index af7c158..cc29340 100644
--- a/doc/skdim.id.DANCo.set_params.rst
+++ b/doc/skdim.id.DANCo.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_DANCo.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.DANCo.transform.rst b/doc/skdim.id.DANCo.transform.rst
new file mode 100644
index 0000000..e2380e1
--- /dev/null
+++ b/doc/skdim.id.DANCo.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L177-L190
+
+
+
+skdim.id.DANCo.transform
+========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: DANCo.transform
\ No newline at end of file
diff --git a/doc/skdim.id.DANCo.transform_pw.rst b/doc/skdim.id.DANCo.transform_pw.rst
new file mode 100644
index 0000000..4c6cd82
--- /dev/null
+++ b/doc/skdim.id.DANCo.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_DANCo.py#L255-L282
+
+
+
+skdim.id.DANCo.transform\_pw
+============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: DANCo.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.ESS.fit.rst b/doc/skdim.id.ESS.fit.rst
index 93fec56..898fc7d 100644
--- a/doc/skdim.id.ESS.fit.rst
+++ b/doc/skdim.id.ESS.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_ESS.py#L301-L372
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L362-L434
 
 
 
diff --git a/doc/skdim.id.ESS.fit_once.rst b/doc/skdim.id.ESS.fit_once.rst
index 782df26..5a8e67c 100644
--- a/doc/skdim.id.ESS.fit_once.rst
+++ b/doc/skdim.id.ESS.fit_once.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_ESS.py#L85-L105
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L80-L100
 
 
 
diff --git a/doc/skdim.id.ESS.fit_transform.rst b/doc/skdim.id.ESS.fit_transform.rst
new file mode 100644
index 0000000..05da341
--- /dev/null
+++ b/doc/skdim.id.ESS.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L451-L492
+
+
+
+skdim.id.ESS.fit\_transform
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: ESS.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.ESS.fit_transform_pw.rst b/doc/skdim.id.ESS.fit_transform_pw.rst
new file mode 100644
index 0000000..7178de5
--- /dev/null
+++ b/doc/skdim.id.ESS.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L523-L563
+
+
+
+skdim.id.ESS.fit\_transform\_pw
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: ESS.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.ESS.get_params.rst b/doc/skdim.id.ESS.get_params.rst
index 03a99d7..b21153f 100644
--- a/doc/skdim.id.ESS.get_params.rst
+++ b/doc/skdim.id.ESS.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_ESS.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.ESS.rst b/doc/skdim.id.ESS.rst
index 883698e..28462ed 100644
--- a/doc/skdim.id.ESS.rst
+++ b/doc/skdim.id.ESS.rst
@@ -20,15 +20,11 @@ skdim.id.ESS
    
       ~skdim.id.ESS.fit
       ~skdim.id.ESS.fit_once
-      ~skdim.id.ESS.fit_predict
-      ~skdim.id.ESS.fit_predict_pw
+      ~skdim.id.ESS.fit_transform
+      ~skdim.id.ESS.fit_transform_pw
       ~skdim.id.ESS.get_params
-      ~skdim.id.ESS.predict
-      ~skdim.id.ESS.predict_pw
       ~skdim.id.ESS.set_params
-   
-   
-
-   
+      ~skdim.id.ESS.transform
+      ~skdim.id.ESS.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.ESS.set_params.rst b/doc/skdim.id.ESS.set_params.rst
index f9254ed..551b4ce 100644
--- a/doc/skdim.id.ESS.set_params.rst
+++ b/doc/skdim.id.ESS.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_ESS.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.ESS.transform.rst b/doc/skdim.id.ESS.transform.rst
new file mode 100644
index 0000000..219556e
--- /dev/null
+++ b/doc/skdim.id.ESS.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L436-L449
+
+
+
+skdim.id.ESS.transform
+======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: ESS.transform
\ No newline at end of file
diff --git a/doc/skdim.id.ESS.transform_pw.rst b/doc/skdim.id.ESS.transform_pw.rst
new file mode 100644
index 0000000..d75d5f0
--- /dev/null
+++ b/doc/skdim.id.ESS.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_ESS.py#L494-L521
+
+
+
+skdim.id.ESS.transform\_pw
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: ESS.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.FisherS.buildSeparabilityGraph.rst b/doc/skdim.id.FisherS.buildSeparabilityGraph.rst
index da1e34c..2e91565 100644
--- a/doc/skdim.id.FisherS.buildSeparabilityGraph.rst
+++ b/doc/skdim.id.FisherS.buildSeparabilityGraph.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L494-L581
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L491-L578
 
 
 
diff --git a/doc/skdim.id.FisherS.check_symmetric.rst b/doc/skdim.id.FisherS.check_symmetric.rst
index 0b684d8..68613e9 100644
--- a/doc/skdim.id.FisherS.check_symmetric.rst
+++ b/doc/skdim.id.FisherS.check_symmetric.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L583-L585
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L580-L582
 
 
 
diff --git a/doc/skdim.id.FisherS.fit.rst b/doc/skdim.id.FisherS.fit.rst
index f40eac0..5f4982c 100644
--- a/doc/skdim.id.FisherS.fit.rst
+++ b/doc/skdim.id.FisherS.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L87-L130
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L82-L127
 
 
 
diff --git a/doc/skdim.id.FisherS.fit_pw.rst b/doc/skdim.id.FisherS.fit_pw.rst
index e2d7f2a..df54a9a 100644
--- a/doc/skdim.id.FisherS.fit_pw.rst
+++ b/doc/skdim.id.FisherS.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.FisherS.fit_transform.rst b/doc/skdim.id.FisherS.fit_transform.rst
new file mode 100644
index 0000000..73bdb73
--- /dev/null
+++ b/doc/skdim.id.FisherS.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L192-L205
+
+
+
+skdim.id.FisherS.fit\_transform
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: FisherS.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.FisherS.fit_transform_pw.rst b/doc/skdim.id.FisherS.fit_transform_pw.rst
new file mode 100644
index 0000000..6e8e23b
--- /dev/null
+++ b/doc/skdim.id.FisherS.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L284-L335
+
+
+
+skdim.id.FisherS.fit\_transform\_pw
+===================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: FisherS.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.FisherS.getSeparabilityGraph.rst b/doc/skdim.id.FisherS.getSeparabilityGraph.rst
index af439a8..92e9a8b 100644
--- a/doc/skdim.id.FisherS.getSeparabilityGraph.rst
+++ b/doc/skdim.id.FisherS.getSeparabilityGraph.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L474-L485
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L471-L482
 
 
 
diff --git a/doc/skdim.id.FisherS.get_params.rst b/doc/skdim.id.FisherS.get_params.rst
index bed0dfc..6828a39 100644
--- a/doc/skdim.id.FisherS.get_params.rst
+++ b/doc/skdim.id.FisherS.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.FisherS.plotSeparabilityGraph.rst b/doc/skdim.id.FisherS.plotSeparabilityGraph.rst
index 39901f1..80499a7 100644
--- a/doc/skdim.id.FisherS.plotSeparabilityGraph.rst
+++ b/doc/skdim.id.FisherS.plotSeparabilityGraph.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L487-L492
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L484-L489
 
 
 
diff --git a/doc/skdim.id.FisherS.point_inseparability_to_pointID.rst b/doc/skdim.id.FisherS.point_inseparability_to_pointID.rst
index 6978fb7..c3d1210 100644
--- a/doc/skdim.id.FisherS.point_inseparability_to_pointID.rst
+++ b/doc/skdim.id.FisherS.point_inseparability_to_pointID.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L400-L472
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L397-L469
 
 
 
diff --git a/doc/skdim.id.FisherS.rst b/doc/skdim.id.FisherS.rst
index c649aa5..194639b 100644
--- a/doc/skdim.id.FisherS.rst
+++ b/doc/skdim.id.FisherS.rst
@@ -21,19 +21,15 @@ skdim.id.FisherS
       ~skdim.id.FisherS.buildSeparabilityGraph
       ~skdim.id.FisherS.check_symmetric
       ~skdim.id.FisherS.fit
-      ~skdim.id.FisherS.fit_predict
-      ~skdim.id.FisherS.fit_predict_pw
       ~skdim.id.FisherS.fit_pw
+      ~skdim.id.FisherS.fit_transform
+      ~skdim.id.FisherS.fit_transform_pw
       ~skdim.id.FisherS.getSeparabilityGraph
       ~skdim.id.FisherS.get_params
       ~skdim.id.FisherS.plotSeparabilityGraph
       ~skdim.id.FisherS.point_inseparability_to_pointID
-      ~skdim.id.FisherS.predict
-      ~skdim.id.FisherS.predict_pw
       ~skdim.id.FisherS.set_params
-   
-   
-
-   
+      ~skdim.id.FisherS.transform
+      ~skdim.id.FisherS.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.FisherS.set_params.rst b/doc/skdim.id.FisherS.set_params.rst
index edc2063..33987e5 100644
--- a/doc/skdim.id.FisherS.set_params.rst
+++ b/doc/skdim.id.FisherS.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_FisherS.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.FisherS.transform.rst b/doc/skdim.id.FisherS.transform.rst
new file mode 100644
index 0000000..60f1721
--- /dev/null
+++ b/doc/skdim.id.FisherS.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L177-L190
+
+
+
+skdim.id.FisherS.transform
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: FisherS.transform
\ No newline at end of file
diff --git a/doc/skdim.id.FisherS.transform_pw.rst b/doc/skdim.id.FisherS.transform_pw.rst
new file mode 100644
index 0000000..27ec737
--- /dev/null
+++ b/doc/skdim.id.FisherS.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_FisherS.py#L255-L282
+
+
+
+skdim.id.FisherS.transform\_pw
+==============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: FisherS.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.KNN.fit.rst b/doc/skdim.id.KNN.fit.rst
index 795fa7f..321f904 100644
--- a/doc/skdim.id.KNN.fit.rst
+++ b/doc/skdim.id.KNN.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_KNN.py#L67-L93
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L65-L91
 
 
 
diff --git a/doc/skdim.id.KNN.fit_pw.rst b/doc/skdim.id.KNN.fit_pw.rst
index d02b593..31b65c2 100644
--- a/doc/skdim.id.KNN.fit_pw.rst
+++ b/doc/skdim.id.KNN.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_KNN.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.KNN.fit_transform.rst b/doc/skdim.id.KNN.fit_transform.rst
new file mode 100644
index 0000000..37f11b7
--- /dev/null
+++ b/doc/skdim.id.KNN.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L192-L205
+
+
+
+skdim.id.KNN.fit\_transform
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: KNN.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.KNN.fit_transform_pw.rst b/doc/skdim.id.KNN.fit_transform_pw.rst
new file mode 100644
index 0000000..cbead0f
--- /dev/null
+++ b/doc/skdim.id.KNN.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L284-L335
+
+
+
+skdim.id.KNN.fit\_transform\_pw
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: KNN.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.KNN.get_params.rst b/doc/skdim.id.KNN.get_params.rst
index 574bd5c..e5656ef 100644
--- a/doc/skdim.id.KNN.get_params.rst
+++ b/doc/skdim.id.KNN.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_KNN.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.KNN.rst b/doc/skdim.id.KNN.rst
index 7920dfa..cfcaa8d 100644
--- a/doc/skdim.id.KNN.rst
+++ b/doc/skdim.id.KNN.rst
@@ -19,16 +19,12 @@ skdim.id.KNN
       :toctree: .
    
       ~skdim.id.KNN.fit
-      ~skdim.id.KNN.fit_predict
-      ~skdim.id.KNN.fit_predict_pw
       ~skdim.id.KNN.fit_pw
+      ~skdim.id.KNN.fit_transform
+      ~skdim.id.KNN.fit_transform_pw
       ~skdim.id.KNN.get_params
-      ~skdim.id.KNN.predict
-      ~skdim.id.KNN.predict_pw
       ~skdim.id.KNN.set_params
-   
-   
-
-   
+      ~skdim.id.KNN.transform
+      ~skdim.id.KNN.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.KNN.set_params.rst b/doc/skdim.id.KNN.set_params.rst
index 4cb1a60..7984f26 100644
--- a/doc/skdim.id.KNN.set_params.rst
+++ b/doc/skdim.id.KNN.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_KNN.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.KNN.transform.rst b/doc/skdim.id.KNN.transform.rst
new file mode 100644
index 0000000..df2858f
--- /dev/null
+++ b/doc/skdim.id.KNN.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L177-L190
+
+
+
+skdim.id.KNN.transform
+======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: KNN.transform
\ No newline at end of file
diff --git a/doc/skdim.id.KNN.transform_pw.rst b/doc/skdim.id.KNN.transform_pw.rst
new file mode 100644
index 0000000..0937af0
--- /dev/null
+++ b/doc/skdim.id.KNN.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_KNN.py#L255-L282
+
+
+
+skdim.id.KNN.transform\_pw
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: KNN.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MADA.fit.rst b/doc/skdim.id.MADA.fit.rst
index d73a51e..803e58d 100644
--- a/doc/skdim.id.MADA.fit.rst
+++ b/doc/skdim.id.MADA.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MADA.py#L301-L372
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L362-L434
 
 
 
diff --git a/doc/skdim.id.MADA.fit_transform.rst b/doc/skdim.id.MADA.fit_transform.rst
new file mode 100644
index 0000000..e7b795b
--- /dev/null
+++ b/doc/skdim.id.MADA.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L451-L492
+
+
+
+skdim.id.MADA.fit\_transform
+============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MADA.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.MADA.fit_transform_pw.rst b/doc/skdim.id.MADA.fit_transform_pw.rst
new file mode 100644
index 0000000..326ce7f
--- /dev/null
+++ b/doc/skdim.id.MADA.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L523-L563
+
+
+
+skdim.id.MADA.fit\_transform\_pw
+================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MADA.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MADA.get_params.rst b/doc/skdim.id.MADA.get_params.rst
index ba3f678..3ef938b 100644
--- a/doc/skdim.id.MADA.get_params.rst
+++ b/doc/skdim.id.MADA.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MADA.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.MADA.rst b/doc/skdim.id.MADA.rst
index ebd219d..47d488f 100644
--- a/doc/skdim.id.MADA.rst
+++ b/doc/skdim.id.MADA.rst
@@ -19,15 +19,11 @@ skdim.id.MADA
       :toctree: .
    
       ~skdim.id.MADA.fit
-      ~skdim.id.MADA.fit_predict
-      ~skdim.id.MADA.fit_predict_pw
+      ~skdim.id.MADA.fit_transform
+      ~skdim.id.MADA.fit_transform_pw
       ~skdim.id.MADA.get_params
-      ~skdim.id.MADA.predict
-      ~skdim.id.MADA.predict_pw
       ~skdim.id.MADA.set_params
-   
-   
-
-   
+      ~skdim.id.MADA.transform
+      ~skdim.id.MADA.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.MADA.set_params.rst b/doc/skdim.id.MADA.set_params.rst
index b080c23..e8a4074 100644
--- a/doc/skdim.id.MADA.set_params.rst
+++ b/doc/skdim.id.MADA.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MADA.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.MADA.transform.rst b/doc/skdim.id.MADA.transform.rst
new file mode 100644
index 0000000..3bc5cd8
--- /dev/null
+++ b/doc/skdim.id.MADA.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L436-L449
+
+
+
+skdim.id.MADA.transform
+=======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MADA.transform
\ No newline at end of file
diff --git a/doc/skdim.id.MADA.transform_pw.rst b/doc/skdim.id.MADA.transform_pw.rst
new file mode 100644
index 0000000..3484ed5
--- /dev/null
+++ b/doc/skdim.id.MADA.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MADA.py#L494-L521
+
+
+
+skdim.id.MADA.transform\_pw
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MADA.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MLE.fit.rst b/doc/skdim.id.MLE.fit.rst
index 21e90de..f291b93 100644
--- a/doc/skdim.id.MLE.fit.rst
+++ b/doc/skdim.id.MLE.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MLE.py#L96-L186
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L90-L180
 
 
 
diff --git a/doc/skdim.id.MLE.fit_once.rst b/doc/skdim.id.MLE.fit_once.rst
index 4cf3b59..a99e0ea 100644
--- a/doc/skdim.id.MLE.fit_once.rst
+++ b/doc/skdim.id.MLE.fit_once.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MLE.py#L249-L256
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L243-L250
 
 
 
diff --git a/doc/skdim.id.MLE.fit_predict.rst b/doc/skdim.id.MLE.fit_predict.rst
index 41761ae..45ef0df 100644
--- a/doc/skdim.id.MLE.fit_predict.rst
+++ b/doc/skdim.id.MLE.fit_predict.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MLE.py#L188-L228
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L182-L222
 
 
 
diff --git a/doc/skdim.id.MLE.fit_transform.rst b/doc/skdim.id.MLE.fit_transform.rst
new file mode 100644
index 0000000..e8f6111
--- /dev/null
+++ b/doc/skdim.id.MLE.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L451-L492
+
+
+
+skdim.id.MLE.fit\_transform
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MLE.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.MLE.fit_transform_pw.rst b/doc/skdim.id.MLE.fit_transform_pw.rst
new file mode 100644
index 0000000..615191f
--- /dev/null
+++ b/doc/skdim.id.MLE.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L523-L563
+
+
+
+skdim.id.MLE.fit\_transform\_pw
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MLE.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MLE.get_params.rst b/doc/skdim.id.MLE.get_params.rst
index a44f457..40d0282 100644
--- a/doc/skdim.id.MLE.get_params.rst
+++ b/doc/skdim.id.MLE.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MLE.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.MLE.rst b/doc/skdim.id.MLE.rst
index 5059309..febab13 100644
--- a/doc/skdim.id.MLE.rst
+++ b/doc/skdim.id.MLE.rst
@@ -21,14 +21,11 @@ skdim.id.MLE
       ~skdim.id.MLE.fit
       ~skdim.id.MLE.fit_once
       ~skdim.id.MLE.fit_predict
-      ~skdim.id.MLE.fit_predict_pw
+      ~skdim.id.MLE.fit_transform
+      ~skdim.id.MLE.fit_transform_pw
       ~skdim.id.MLE.get_params
-      ~skdim.id.MLE.predict
-      ~skdim.id.MLE.predict_pw
       ~skdim.id.MLE.set_params
-   
-   
-
-   
+      ~skdim.id.MLE.transform
+      ~skdim.id.MLE.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.MLE.set_params.rst b/doc/skdim.id.MLE.set_params.rst
index 442e6e5..5e0e215 100644
--- a/doc/skdim.id.MLE.set_params.rst
+++ b/doc/skdim.id.MLE.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MLE.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.MLE.transform.rst b/doc/skdim.id.MLE.transform.rst
new file mode 100644
index 0000000..e5a7185
--- /dev/null
+++ b/doc/skdim.id.MLE.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L436-L449
+
+
+
+skdim.id.MLE.transform
+======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MLE.transform
\ No newline at end of file
diff --git a/doc/skdim.id.MLE.transform_pw.rst b/doc/skdim.id.MLE.transform_pw.rst
new file mode 100644
index 0000000..b14a6b6
--- /dev/null
+++ b/doc/skdim.id.MLE.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MLE.py#L494-L521
+
+
+
+skdim.id.MLE.transform\_pw
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MLE.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MOM.fit.rst b/doc/skdim.id.MOM.fit.rst
index 84bca24..87ce55b 100644
--- a/doc/skdim.id.MOM.fit.rst
+++ b/doc/skdim.id.MOM.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MOM.py#L301-L372
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L362-L434
 
 
 
diff --git a/doc/skdim.id.MOM.fit_transform.rst b/doc/skdim.id.MOM.fit_transform.rst
new file mode 100644
index 0000000..d7a4939
--- /dev/null
+++ b/doc/skdim.id.MOM.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L451-L492
+
+
+
+skdim.id.MOM.fit\_transform
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MOM.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.MOM.fit_transform_pw.rst b/doc/skdim.id.MOM.fit_transform_pw.rst
new file mode 100644
index 0000000..ff7c232
--- /dev/null
+++ b/doc/skdim.id.MOM.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L523-L563
+
+
+
+skdim.id.MOM.fit\_transform\_pw
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MOM.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MOM.get_params.rst b/doc/skdim.id.MOM.get_params.rst
index 462511a..18fc80d 100644
--- a/doc/skdim.id.MOM.get_params.rst
+++ b/doc/skdim.id.MOM.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MOM.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.MOM.rst b/doc/skdim.id.MOM.rst
index 76949b3..32dd4d6 100644
--- a/doc/skdim.id.MOM.rst
+++ b/doc/skdim.id.MOM.rst
@@ -19,15 +19,11 @@ skdim.id.MOM
       :toctree: .
    
       ~skdim.id.MOM.fit
-      ~skdim.id.MOM.fit_predict
-      ~skdim.id.MOM.fit_predict_pw
+      ~skdim.id.MOM.fit_transform
+      ~skdim.id.MOM.fit_transform_pw
       ~skdim.id.MOM.get_params
-      ~skdim.id.MOM.predict
-      ~skdim.id.MOM.predict_pw
       ~skdim.id.MOM.set_params
-   
-   
-
-   
+      ~skdim.id.MOM.transform
+      ~skdim.id.MOM.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.MOM.set_params.rst b/doc/skdim.id.MOM.set_params.rst
index 239dce9..e87a6e5 100644
--- a/doc/skdim.id.MOM.set_params.rst
+++ b/doc/skdim.id.MOM.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MOM.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.MOM.transform.rst b/doc/skdim.id.MOM.transform.rst
new file mode 100644
index 0000000..77a8b84
--- /dev/null
+++ b/doc/skdim.id.MOM.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L436-L449
+
+
+
+skdim.id.MOM.transform
+======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MOM.transform
\ No newline at end of file
diff --git a/doc/skdim.id.MOM.transform_pw.rst b/doc/skdim.id.MOM.transform_pw.rst
new file mode 100644
index 0000000..3444145
--- /dev/null
+++ b/doc/skdim.id.MOM.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MOM.py#L494-L521
+
+
+
+skdim.id.MOM.transform\_pw
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MOM.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MiND_ML.fit.rst b/doc/skdim.id.MiND_ML.fit.rst
index 39e2506..ac51f79 100644
--- a/doc/skdim.id.MiND_ML.fit.rst
+++ b/doc/skdim.id.MiND_ML.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L65-L88
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L56-L79
 
 
 
diff --git a/doc/skdim.id.MiND_ML.fit_pw.rst b/doc/skdim.id.MiND_ML.fit_pw.rst
index 1fbcc00..1d708b4 100644
--- a/doc/skdim.id.MiND_ML.fit_pw.rst
+++ b/doc/skdim.id.MiND_ML.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.MiND_ML.fit_transform.rst b/doc/skdim.id.MiND_ML.fit_transform.rst
new file mode 100644
index 0000000..c8a93e1
--- /dev/null
+++ b/doc/skdim.id.MiND_ML.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L192-L205
+
+
+
+skdim.id.MiND\_ML.fit\_transform
+================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MiND_ML.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.MiND_ML.fit_transform_pw.rst b/doc/skdim.id.MiND_ML.fit_transform_pw.rst
new file mode 100644
index 0000000..88ba00b
--- /dev/null
+++ b/doc/skdim.id.MiND_ML.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L284-L335
+
+
+
+skdim.id.MiND\_ML.fit\_transform\_pw
+====================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MiND_ML.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.MiND_ML.get_params.rst b/doc/skdim.id.MiND_ML.get_params.rst
index d72130b..9cf837f 100644
--- a/doc/skdim.id.MiND_ML.get_params.rst
+++ b/doc/skdim.id.MiND_ML.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.MiND_ML.rst b/doc/skdim.id.MiND_ML.rst
index dfea582..05661ef 100644
--- a/doc/skdim.id.MiND_ML.rst
+++ b/doc/skdim.id.MiND_ML.rst
@@ -19,16 +19,12 @@ skdim.id.MiND\_ML
       :toctree: .
    
       ~skdim.id.MiND_ML.fit
-      ~skdim.id.MiND_ML.fit_predict
-      ~skdim.id.MiND_ML.fit_predict_pw
       ~skdim.id.MiND_ML.fit_pw
+      ~skdim.id.MiND_ML.fit_transform
+      ~skdim.id.MiND_ML.fit_transform_pw
       ~skdim.id.MiND_ML.get_params
-      ~skdim.id.MiND_ML.predict
-      ~skdim.id.MiND_ML.predict_pw
       ~skdim.id.MiND_ML.set_params
-   
-   
-
-   
+      ~skdim.id.MiND_ML.transform
+      ~skdim.id.MiND_ML.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.MiND_ML.set_params.rst b/doc/skdim.id.MiND_ML.set_params.rst
index a3780a9..251679a 100644
--- a/doc/skdim.id.MiND_ML.set_params.rst
+++ b/doc/skdim.id.MiND_ML.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.MiND_ML.transform.rst b/doc/skdim.id.MiND_ML.transform.rst
new file mode 100644
index 0000000..ff21077
--- /dev/null
+++ b/doc/skdim.id.MiND_ML.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L177-L190
+
+
+
+skdim.id.MiND\_ML.transform
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MiND_ML.transform
\ No newline at end of file
diff --git a/doc/skdim.id.MiND_ML.transform_pw.rst b/doc/skdim.id.MiND_ML.transform_pw.rst
new file mode 100644
index 0000000..70f9da9
--- /dev/null
+++ b/doc/skdim.id.MiND_ML.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_MiND_ML.py#L255-L282
+
+
+
+skdim.id.MiND\_ML.transform\_pw
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: MiND_ML.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.TLE.fit.rst b/doc/skdim.id.TLE.fit.rst
index cb7cab2..69ceae9 100644
--- a/doc/skdim.id.TLE.fit.rst
+++ b/doc/skdim.id.TLE.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TLE.py#L301-L372
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L362-L434
 
 
 
diff --git a/doc/skdim.id.TLE.fit_transform.rst b/doc/skdim.id.TLE.fit_transform.rst
new file mode 100644
index 0000000..27244e1
--- /dev/null
+++ b/doc/skdim.id.TLE.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L451-L492
+
+
+
+skdim.id.TLE.fit\_transform
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TLE.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.TLE.fit_transform_pw.rst b/doc/skdim.id.TLE.fit_transform_pw.rst
new file mode 100644
index 0000000..b95e4ad
--- /dev/null
+++ b/doc/skdim.id.TLE.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L523-L563
+
+
+
+skdim.id.TLE.fit\_transform\_pw
+===============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TLE.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.TLE.get_params.rst b/doc/skdim.id.TLE.get_params.rst
index 15d5038..9746533 100644
--- a/doc/skdim.id.TLE.get_params.rst
+++ b/doc/skdim.id.TLE.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TLE.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.TLE.rst b/doc/skdim.id.TLE.rst
index 9dccbcb..73efb7d 100644
--- a/doc/skdim.id.TLE.rst
+++ b/doc/skdim.id.TLE.rst
@@ -19,15 +19,11 @@ skdim.id.TLE
       :toctree: .
    
       ~skdim.id.TLE.fit
-      ~skdim.id.TLE.fit_predict
-      ~skdim.id.TLE.fit_predict_pw
+      ~skdim.id.TLE.fit_transform
+      ~skdim.id.TLE.fit_transform_pw
       ~skdim.id.TLE.get_params
-      ~skdim.id.TLE.predict
-      ~skdim.id.TLE.predict_pw
       ~skdim.id.TLE.set_params
-   
-   
-
-   
+      ~skdim.id.TLE.transform
+      ~skdim.id.TLE.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.TLE.set_params.rst b/doc/skdim.id.TLE.set_params.rst
index ed48e6f..1739621 100644
--- a/doc/skdim.id.TLE.set_params.rst
+++ b/doc/skdim.id.TLE.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TLE.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.TLE.transform.rst b/doc/skdim.id.TLE.transform.rst
new file mode 100644
index 0000000..35184d6
--- /dev/null
+++ b/doc/skdim.id.TLE.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L436-L449
+
+
+
+skdim.id.TLE.transform
+======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TLE.transform
\ No newline at end of file
diff --git a/doc/skdim.id.TLE.transform_pw.rst b/doc/skdim.id.TLE.transform_pw.rst
new file mode 100644
index 0000000..2136fbf
--- /dev/null
+++ b/doc/skdim.id.TLE.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TLE.py#L494-L521
+
+
+
+skdim.id.TLE.transform\_pw
+==========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TLE.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.TwoNN.fit.rst b/doc/skdim.id.TwoNN.fit.rst
index 07f9445..50d34fc 100644
--- a/doc/skdim.id.TwoNN.fit.rst
+++ b/doc/skdim.id.TwoNN.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L74-L93
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L85-L104
 
 
 
diff --git a/doc/skdim.id.TwoNN.fit_pw.rst b/doc/skdim.id.TwoNN.fit_pw.rst
index 04f70a6..cc72dec 100644
--- a/doc/skdim.id.TwoNN.fit_pw.rst
+++ b/doc/skdim.id.TwoNN.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.TwoNN.fit_transform.rst b/doc/skdim.id.TwoNN.fit_transform.rst
new file mode 100644
index 0000000..01fd074
--- /dev/null
+++ b/doc/skdim.id.TwoNN.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L192-L205
+
+
+
+skdim.id.TwoNN.fit\_transform
+=============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TwoNN.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.TwoNN.fit_transform_pw.rst b/doc/skdim.id.TwoNN.fit_transform_pw.rst
new file mode 100644
index 0000000..983cc38
--- /dev/null
+++ b/doc/skdim.id.TwoNN.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L284-L335
+
+
+
+skdim.id.TwoNN.fit\_transform\_pw
+=================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TwoNN.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.TwoNN.get_params.rst b/doc/skdim.id.TwoNN.get_params.rst
index ec5d69e..255e384 100644
--- a/doc/skdim.id.TwoNN.get_params.rst
+++ b/doc/skdim.id.TwoNN.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.TwoNN.rst b/doc/skdim.id.TwoNN.rst
index cc21760..e413c03 100644
--- a/doc/skdim.id.TwoNN.rst
+++ b/doc/skdim.id.TwoNN.rst
@@ -19,16 +19,12 @@ skdim.id.TwoNN
       :toctree: .
    
       ~skdim.id.TwoNN.fit
-      ~skdim.id.TwoNN.fit_predict
-      ~skdim.id.TwoNN.fit_predict_pw
       ~skdim.id.TwoNN.fit_pw
+      ~skdim.id.TwoNN.fit_transform
+      ~skdim.id.TwoNN.fit_transform_pw
       ~skdim.id.TwoNN.get_params
-      ~skdim.id.TwoNN.predict
-      ~skdim.id.TwoNN.predict_pw
       ~skdim.id.TwoNN.set_params
-   
-   
-
-   
+      ~skdim.id.TwoNN.transform
+      ~skdim.id.TwoNN.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.TwoNN.set_params.rst b/doc/skdim.id.TwoNN.set_params.rst
index 9509aed..655fcdd 100644
--- a/doc/skdim.id.TwoNN.set_params.rst
+++ b/doc/skdim.id.TwoNN.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.TwoNN.transform.rst b/doc/skdim.id.TwoNN.transform.rst
new file mode 100644
index 0000000..5ebe075
--- /dev/null
+++ b/doc/skdim.id.TwoNN.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L177-L190
+
+
+
+skdim.id.TwoNN.transform
+========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TwoNN.transform
\ No newline at end of file
diff --git a/doc/skdim.id.TwoNN.transform_pw.rst b/doc/skdim.id.TwoNN.transform_pw.rst
new file mode 100644
index 0000000..386cc36
--- /dev/null
+++ b/doc/skdim.id.TwoNN.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_TwoNN.py#L255-L282
+
+
+
+skdim.id.TwoNN.transform\_pw
+============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: TwoNN.transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.lPCA.fit.rst b/doc/skdim.id.lPCA.fit.rst
index dd21087..f0ff8d1 100644
--- a/doc/skdim.id.lPCA.fit.rst
+++ b/doc/skdim.id.lPCA.fit.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_PCA.py#L91-L112
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L89-L111
 
 
 
diff --git a/doc/skdim.id.lPCA.fit_pw.rst b/doc/skdim.id.lPCA.fit_pw.rst
index 5cd0548..1a5bb35 100644
--- a/doc/skdim.id.lPCA.fit_pw.rst
+++ b/doc/skdim.id.lPCA.fit_pw.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_PCA.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L207-L253
 
 
 
diff --git a/doc/skdim.id.lPCA.fit_transform.rst b/doc/skdim.id.lPCA.fit_transform.rst
new file mode 100644
index 0000000..78005fe
--- /dev/null
+++ b/doc/skdim.id.lPCA.fit_transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L192-L205
+
+
+
+skdim.id.lPCA.fit\_transform
+============================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: lPCA.fit_transform
\ No newline at end of file
diff --git a/doc/skdim.id.lPCA.fit_transform_pw.rst b/doc/skdim.id.lPCA.fit_transform_pw.rst
new file mode 100644
index 0000000..545bd89
--- /dev/null
+++ b/doc/skdim.id.lPCA.fit_transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L284-L335
+
+
+
+skdim.id.lPCA.fit\_transform\_pw
+================================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: lPCA.fit_transform_pw
\ No newline at end of file
diff --git a/doc/skdim.id.lPCA.get_params.rst b/doc/skdim.id.lPCA.get_params.rst
index 0c26138..8e11ded 100644
--- a/doc/skdim.id.lPCA.get_params.rst
+++ b/doc/skdim.id.lPCA.get_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_PCA.py#L189-L219
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L178-L200
 
 
 
diff --git a/doc/skdim.id.lPCA.rst b/doc/skdim.id.lPCA.rst
index 730e070..146843c 100644
--- a/doc/skdim.id.lPCA.rst
+++ b/doc/skdim.id.lPCA.rst
@@ -19,16 +19,12 @@ skdim.id.lPCA
       :toctree: .
    
       ~skdim.id.lPCA.fit
-      ~skdim.id.lPCA.fit_predict
-      ~skdim.id.lPCA.fit_predict_pw
       ~skdim.id.lPCA.fit_pw
+      ~skdim.id.lPCA.fit_transform
+      ~skdim.id.lPCA.fit_transform_pw
       ~skdim.id.lPCA.get_params
-      ~skdim.id.lPCA.predict
-      ~skdim.id.lPCA.predict_pw
       ~skdim.id.lPCA.set_params
-   
-   
-
-   
+      ~skdim.id.lPCA.transform
+      ~skdim.id.lPCA.transform_pw
    
    
\ No newline at end of file
diff --git a/doc/skdim.id.lPCA.set_params.rst b/doc/skdim.id.lPCA.set_params.rst
index 521e9bf..7599e37 100644
--- a/doc/skdim.id.lPCA.set_params.rst
+++ b/doc/skdim.id.lPCA.set_params.rst
@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_PCA.py#L221-L263
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L202-L244
 
 
 
diff --git a/doc/skdim.id.lPCA.transform.rst b/doc/skdim.id.lPCA.transform.rst
new file mode 100644
index 0000000..289069c
--- /dev/null
+++ b/doc/skdim.id.lPCA.transform.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L177-L190
+
+
+
+skdim.id.lPCA.transform
+=======================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: lPCA.transform
\ No newline at end of file
diff --git a/doc/skdim.id.lPCA.transform_pw.rst b/doc/skdim.id.lPCA.transform_pw.rst
new file mode 100644
index 0000000..18af01c
--- /dev/null
+++ b/doc/skdim.id.lPCA.transform_pw.rst
@@ -0,0 +1,10 @@
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_PCA.py#L255-L282
+
+
+
+skdim.id.lPCA.transform\_pw
+===========================
+
+.. currentmodule:: skdim.id
+
+.. automethod:: lPCA.transform_pw
\ No newline at end of file
diff --git a/skdim/_commonfuncs.py b/skdim/_commonfuncs.py
index b5563b9..680128f 100644
--- a/skdim/_commonfuncs.py
+++ b/skdim/_commonfuncs.py
@@ -157,7 +157,7 @@ def asPointwise(data, class_instance, precomputed_knn=None, n_neighbors=100, n_j
 
 
 class GlobalEstimator(BaseEstimator):  # , metaclass=DocInheritorBase):
-    """ Template base class: inherit BaseEstimator, define predict, fit_predict, fit_pw, predict_pw, fit_predict_pw 
+    """ Template base class: inherit BaseEstimator, define transform, fit_transform, fit_pw, transform_pw, fit_transform_pw 
     
     Attributes
     ----------
@@ -174,7 +174,7 @@ def _more_tags(self):
             "_skip_test": "check_methods_subset_invariance"
         }  # skip a test from sklearn.utils.estimator_checks because ID estimators are not subset invariant
 
-    def predict(self, X=None):
+    def transform(self, X=None):
         """ Predict dimension after a previous call to self.fit
 
         Parameters
@@ -189,7 +189,7 @@ def predict(self, X=None):
         check_is_fitted(self, "is_fitted_")
         return self.dimension_
 
-    def fit_predict(self, X, y=None):
+    def fit_transform(self, X, y=None):
         """Fit estimator and return ID
 
         Parameters
@@ -252,7 +252,7 @@ def fit_pw(self, X, precomputed_knn=None, smooth=False, n_neighbors=100, n_jobs=
                 )
         return self
 
-    def predict_pw(self, X=None):
+    def transform_pw(self, X=None):
         """ Return an array of pointwise ID estimates after a previous call to self.fit_pw
 
         Parameters
@@ -281,7 +281,7 @@ def predict_pw(self, X=None):
         else:
             return self.dimension_pw_
 
-    def fit_predict_pw(
+    def fit_transform_pw(
         self, X, precomputed_knn=None, smooth=False, n_neighbors=100, n_jobs=1
     ):
         """Returns an array of pointwise ID estimates by fitting the estimator in kNN of each point.
@@ -336,7 +336,7 @@ def fit_predict_pw(
 
 
 class LocalEstimator(BaseEstimator):  # , metaclass=DocInheritorBase):
-    """ Template base class: generic _fit, fit, predict_pw for local ID estimators 
+    """ Template base class: generic _fit, fit, transform_pw for local ID estimators 
     
     Attributes
     ----------
@@ -433,7 +433,7 @@ def fit(
         self.is_fitted_ = True
         return self
 
-    def predict(self, X=None):
+    def transform(self, X=None):
         """ Predict ID after a previous call to self.fit
 
         Parameters
@@ -448,7 +448,7 @@ def predict(self, X=None):
         check_is_fitted(self, "is_fitted_")
         return self.dimension_
 
-    def fit_predict(
+    def fit_transform(
         self,
         X,
         y=None,
@@ -458,7 +458,7 @@ def fit_predict(
         comb="mean",
         n_jobs=1,
     ):
-        """Fit-predict method for local ID estimators
+        """Fit-transform method for local ID estimators
 
         Parameters
         ----------
@@ -491,7 +491,7 @@ def fit_predict(
             n_jobs=n_jobs,
         ).dimension_
 
-    def predict_pw(self, X=None):
+    def transform_pw(self, X=None):
         """ Return an array of pointwise ID estimates after a previous call to self.fit_pw
 
         Parameters
@@ -520,7 +520,7 @@ def predict_pw(self, X=None):
         else:
             return self.dimension_pw_
 
-    def fit_predict_pw(
+    def fit_transform_pw(
         self, X, precomputed_knn_arrays=None, smooth=False, n_neighbors=None, n_jobs=1
     ):
         """
diff --git a/skdim/tests/test_all_params.py b/skdim/tests/test_all_params.py
index c4b4c88..98a436f 100644
--- a/skdim/tests/test_all_params.py
+++ b/skdim/tests/test_all_params.py
@@ -61,11 +61,11 @@ def test_ess_params(data):
     x = skdim.id.ESS().fit_once(data)
 
     ### additionally test all common LocalEstimator base functions
-    x = skdim.id.ESS().fit(data).predict()
-    x = skdim.id.ESS().fit(data).predict_pw()
-    x = skdim.id.ESS().fit_predict(data)
-    x = skdim.id.ESS().fit_predict_pw(data)
-    x = skdim.id.ESS().fit_predict_pw(data, smooth=True)
+    x = skdim.id.ESS().fit(data).transform()
+    x = skdim.id.ESS().fit(data).transform_pw()
+    x = skdim.id.ESS().fit_transform(data)
+    x = skdim.id.ESS().fit_transform_pw(data)
+    x = skdim.id.ESS().fit_transform_pw(data, smooth=True)
 
 
 def test_fisher_params(data, monkeypatch):
@@ -79,10 +79,10 @@ def test_fisher_params(data, monkeypatch):
     x = skdim.id.FisherS().fit(data).point_inseparability_to_pointID()
 
     ### additionally test all common GlobalEstimator base functions
-    x = skdim.id.FisherS().fit(data).predict()
-    x = skdim.id.FisherS().fit_pw(data, n_neighbors=50).predict_pw()
-    x = skdim.id.FisherS().fit_predict(data)
-    x = skdim.id.FisherS().fit_predict_pw(data, n_neighbors=50)
+    x = skdim.id.FisherS().fit(data).transform()
+    x = skdim.id.FisherS().fit_pw(data, n_neighbors=50).transform_pw()
+    x = skdim.id.FisherS().fit_transform(data)
+    x = skdim.id.FisherS().fit_transform_pw(data, n_neighbors=50)
 
 
 def test_mind_ml_params(data):