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reframe_config.py
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reframe_config.py
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# define csd3:cclake parameters common across reframe partitions:
csd3_cclake_common = {
'scheduler': 'slurm',
'launcher': 'srun',
'access': [
'--partition=cclake',
'--account=support-cpu',
'--exclude=cpu-p-[1-280,337-672]', # only use one rack's-worth of nodes at present: use rack 6 (cpu-p-[281-336]) as this is all ok
],
'max_jobs': 20,
}
site_configuration = {
'systems': [
{
'name':'csd3',
'descr': 'Cambridge Service for Data Driven Discovery: https://docs.hpc.cam.ac.uk/hpc/index.html',
'hostnames': ['login-e-*'],
'modules_system': 'tmod32',
'stagedir': '/rds/user/hpcbras1/hpc-work',
'partitions': [
{
**csd3_cclake_common,
**{
'name': 'cclake-ib-icc19-impi19-ucx',
'descr': '100Gb Infiniband using icc 19.1.2.254 and impi 2019 Update 8 with UCX',
'environs': ['sysinfo', 'imb', 'nxnlatbw', 'castep', 'wrf', 'intel-hpl'],
'variables': [
['UCX_NET_DEVICES', 'mlx5_0:1'], # only use IB
],
'modules': ['rhel7/default-ccl'],
},
},
{
**csd3_cclake_common,
**{
'name': 'cclake-roce-icc19-impi19-ucx',
'descr': '50Gb RoCE using icc 19.1.2.254 and impi 2019 Update 8 with UCX',
'environs': ['imb', 'castep', 'wrf', 'nxnlatbw', 'intel-hpl'],
'variables': [
['UCX_NET_DEVICES', 'mlx5_1:1'], # only use RoCE
],
'modules': ['rhel7/default-ccl'],
},
},
{
**csd3_cclake_common,
**{
'name': 'cclake-ib-gcc9-ompi3-ucx',
'descr': '100Gb Infiniband using gcc 9.1.0 and openmpi 3.1.6 with UCX',
'environs': ['imb', 'gromacs', 'omb', 'openfoam', 'nxnlatbw'],
'modules': ['openmpi-3.1.6-gcc-9.1.0-omffmfv'],
'variables': [
['SLURM_MPI_TYPE', 'pmix_v3'], # available for ompi3+
['UCX_NET_DEVICES', 'mlx5_0:1'], # only use IB
],
}
},
{
**csd3_cclake_common,
**{
'name': 'cclake-roce-gcc9-ompi3-ucx',
'descr': '50Gb Infiniband using gcc 9.1.0 and openmpi 3.1.6 with UCX',
'environs': ['imb', 'gromacs', 'omb', 'openfoam', 'nxnlatbw'],
'modules': ['openmpi-3.1.6-gcc-9.1.0-omffmfv'],
'variables': [
['SLURM_MPI_TYPE', 'pmix_v3'], # available for ompi3+
['UCX_NET_DEVICES', 'mlx5_1:1'], # only use RoCE
],
}
},
]
},
{
'name':'alaska',
# Changelist for non-reframe changes:
# - 10-09-20: C-states disabled
'descr':'Default AlaSKA OpenHPC p3-appliances slurm cluster',
'hostnames': ['openhpc-login-0', 'openhpc-compute'],
'modules_system':'lmod',
'partitions':[
{
'name':'ib-gcc9-impi-verbs',
'descr': '100Gb Infiniband with gcc 9.3.0 and Intel MPI 2019.7.217',
'scheduler': 'slurm',
'launcher':'mpirun',
'max_jobs':8,
'environs': ['imb', 'omb', 'intel-hpl', 'intel-hpcg'],
'modules': ['gcc/9.3.0-5abm3xg', 'intel-mpi/2019.7.217-bzs5ocr'],
'variables': [
#['FI_PROVIDER', 'mlx'] # doesn't work, needs ucx
['FI_VERBS_IFACE', 'ib'] # # Network interface to use - this is actually default
# these were (failed) attempts to make `srun` work:
#['I_MPI_PMI_LIBRARY', '/opt/ohpc/admin/pmix/lib/libpmi.so'], # see https://slurm.schedmd.com/mpi_guide.html#intel_mpi
#['SLURM_MPI_TYPE', 'pmi2'],
],
},
{
'name':'roce-gcc9-impi-verbs',
'descr': '25Gb RoCE with gcc 9.3.0 and Intel MPI 2019.7.217 using verbs',
'scheduler': 'slurm',
'launcher':'mpirun',
'max_jobs':8,
'environs': ['imb', 'omb', 'intel-hpl', 'intel-hpcg'],
'modules': ['gcc/9.3.0-5abm3xg', 'intel-mpi/2019.7.217-bzs5ocr'],
'variables': [
['FI_VERBS_IFACE', 'p3p2'] # Network interface to use.
],
},
{
'name':'ib-gcc9-openmpi4-ucx',
'descr':'100Gb Infiniband with gcc 9.3.0 and openmpi 4.0.3 using UCX transport layer',
'scheduler': 'slurm',
'launcher':'srun',
'max_jobs':8,
'environs':['imb', 'omb', 'gromacs', 'openfoam', 'cp2k', 'sysinfo', 'nxnlatbw'],
'modules': ['gcc/9.3.0-5abm3xg', 'openmpi/4.0.3-qpsxmnc'],
'variables': [
['SLURM_MPI_TYPE', 'pmix_v2'],
# force IB:
['UCX_NET_DEVICES', 'mlx5_0:1'],
]
},
{
'name':'roce-gcc9-openmpi4-ucx',
'descr':'25Gb RoCE with gcc 9.3.0 and openmpi 4.0.3 using UCX transport layer',
'scheduler': 'slurm',
'launcher':'srun',
'max_jobs':8,
'environs':['imb', 'omb', 'gromacs', 'openfoam', 'cp2k', 'nxnlatbw'],
'modules': ['gcc/9.3.0-5abm3xg', 'openmpi/4.0.3-qpsxmnc'],
'variables': [
['SLURM_MPI_TYPE', 'pmix_v2'],
# use roce:
['UCX_NET_DEVICES', 'mlx5_1:1'],
]
},
]
}, # end alaska
# < insert new systems here >
],
'environments': [
{
'name': 'imb', # a non-targeted environment seems to be necessary for reframe to load the config
# will also work for csd3:cclake-{ib,roce}-icc19-impi19-ucx as the partition's module makes this available
},
{
'name': 'imb',
'target_systems': ['alaska:ib-gcc9-openmpi4-ucx', 'alaska:roce-gcc9-openmpi4-ucx'],
'modules': ['intel-mpi-benchmarks/2019.5-dwg5q6j'],
},
{
'name': 'imb',
'target_systems': ['alaska:ib-gcc9-impi-verbs', 'alaska:roce-gcc9-impi-verbs'],
'modules': ['intel-mpi-benchmarks/2019.5-w54huiw'],
},
{
'name': 'imb',
'target_systems': ['csd3:cclake-ib-gcc9-ompi3-ucx', 'csd3:cclake-roce-gcc9-ompi3-ucx'],
'modules': ['intel-mpi-benchmarks-2019.6-gcc-9.1.0-5tbknir']
},
{
'name': 'gromacs',
},
{
'name': 'gromacs',
'target_systems': ['alaska:ib-gcc9-openmpi4-ucx', 'alaska:roce-gcc9-openmpi4-ucx'],
'modules': ['gromacs/2016.4-y5sjbs4']
},
{
'name': 'gromacs',
'target_systems': ['csd3:cclake-ib-gcc9-ompi3-ucx', 'csd3:cclake-roce-gcc9-ompi3-ucx'],
'modules': ['gromacs-2016.6-gcc-9.1.0-kgomb67']
},
{
'name': 'omb',
},
{
'name': 'omb',
'target_systems': ['alaska:ib-gcc9-openmpi4-ucx', 'alaska:roce-gcc9-openmpi4-ucx'],
'modules': ['osu-micro-benchmarks/5.6.2-vx3wtzo']
},
{
'name': 'omb',
'target_systems': ['alaska:ib-gcc9-impi-verbs', 'alaska:roce-gcc9-impi-verbs'],
'modules': ['osu-micro-benchmarks/5.6.2-ppxiddg']
},
{
'name': 'omb',
'target_systems': ['csd3:cclake-ib-gcc9-ompi3-ucx', 'csd3:cclake-roce-gcc9-ompi3-ucx'],
'modules': ['osu-micro-benchmarks-5.6.3-gcc-9.1.0-nsxydkj']
},
{
'name': 'intel-hpl',
},
{
'name': 'intel-hpl',
'target_systems': ['alaska:ib-gcc9-impi-verbs', 'alaska:roce-gcc9-impi-verbs'],
'modules': ['intel-mkl/2020.1.217-5tpgp7b'], # now installed
},
{
'name': 'intel-hpl',
'target_systems': ['csd3:cclake-ib-icc19-impi19-ucx', 'csd3:cclake-roce-icc19-impi19-ucx'],
'modules': [], # MKL provided as part of partition's modules
},
{
'name': 'intel-hpcg',
},
{
'name': 'intel-hpcg',
'target_systems': ['alaska:ib-gcc9-impi-verbs', 'alaska:roce-gcc9-impi-verbs'],
'modules': ['intel-mkl/2020.1.217-5tpgp7b'],
'variables':[
['PATH', '$PATH:$MKLROOT/benchmarks/hpcg/bin/'], # MKLROOT provided by mkl module
['XHPCG_BIN', 'xhpcg_avx2'],
['SLURM_CPU_BIND', 'verbose'], # doesn't work as task/affinity plugin not enabled
]
},
{
'name':'openfoam'
},
{
'name':'openfoam',
'target_systems': ['alaska:ib-gcc9-openmpi4-ucx', 'alaska:roce-gcc9-openmpi4-ucx'],
'modules': ['openfoam-org/7-4zgjbg2']
},
{
'name':'openfoam',
'target_systems': ['csd3:cclake-ib-gcc9-ompi3-ucx', 'csd3:cclake-roce-gcc9-ompi3-ucx'],
'modules': ['openfoam-org-7-gcc-9.1.0-dahapws']
},
{
'name':'cp2k',
},
{
'name':'cp2k',
'target_systems': ['alaska:ib-gcc9-openmpi4-ucx', 'alaska:roce-gcc9-openmpi4-ucx'],
'modules': ['cp2k/7.1-akb54dx']
},
{
'name': 'sysinfo',
},
{
'name': 'nxnlatbw',
'cc': 'mpicc',
},
{
'name': 'castep',
},
{
'name': 'castep',
'target_systems': ['csd3:cclake-ib-icc19-impi19-ucx', 'csd3:cclake-roce-icc19-impi19-ucx'],
'modules': ['castep'] # castep 17.2.1 with Intel MPI but I don't know which!
},
# {
# 'name': 'sysinfo',
# 'target_systems': ['alaska:ib-gcc9-openmpi4-ucx'] #, 'alaska:roce-gcc9-openmpi4-ucx'],
# },
{
'name': 'wrf',
},
{
'name': 'wrf',
'target_systems': ['csd3:cclake-ib-icc19-impi19-ucx', 'csd3:cclake-roce-icc19-impi19-ucx'],
'modules': [], # intel module already loaded in partition, wrf not defined as module (yet)
'variables': [['WRF_DIR', "$HOME/wrf-build-icc19-impi19-hsw/WRFV3.8.1"]] # TODO: use a module instead
},
],
'logging': [
{
'level': 'debug',
'handlers': [
{
'type': 'file',
'name': 'reframe.log',
'level': 'debug',
'format': '[%(asctime)s] %(levelname)s: %(check_name)s: %(message)s', # noqa: E501
'append': False
},
{
'type': 'stream',
'name': 'stdout',
'level': 'info',
'format': '%(message)s'
},
{
'type': 'file',
'name': 'reframe.out',
'level': 'info',
'format': '%(message)s',
'append': False
}
],
'handlers_perflog': [
{
'type': 'filelog',
# make this the same as output filenames which are ('sysname', 'partition', 'environ', 'testname', 'filename')
'prefix': '%(check_system)s/%(check_partition)s/%(check_environ)s/%(check_name)s', # <testname>.log gets appended
'level': 'info',
# added units here - see Reference: https://reframe-hpc.readthedocs.io/en/latest/config_reference.html?highlight=perflog#logging-.handlers_perflog
'format': '%(check_job_completion_time)s|reframe %(version)s|%(check_info)s|jobid=%(check_jobid)s|%(check_perf_var)s=%(check_perf_value)s|%(check_perf_unit)s|ref=%(check_perf_ref)s (l=%(check_perf_lower_thres)s, u=%(check_perf_upper_thres)s)|%(check_tags)s', # noqa: E501
'datefmt': '%FT%T%:z',
'append': True
}
]
}
],
'general': [
{
'check_search_path': ['./'],
'check_search_recursive': True
}
]
}