{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":274147568,"defaultBranch":"main","name":"sgkit","ownerLogin":"tomwhite","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2020-06-22T13:40:09.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/85085?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1727187315.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"eeef90b4ee8b4149646034c0d554f0c2ad88626b","ref":"refs/heads/remove-vcf","pushedAt":"2024-09-24T14:15:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Remove VCF docs and refer to bio2zarr and vcztools","shortMessageHtmlLink":"Remove VCF docs and refer to bio2zarr and vcztools"}},{"before":null,"after":"21c4f6a41b6a683756ea4bdd85224777345e70e2","ref":"refs/heads/python-3.12","pushedAt":"2024-09-24T10:56:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Test on Python 3.12","shortMessageHtmlLink":"Test on Python 3.12"}},{"before":null,"after":"1de068b1c12f9443b7e04e4afb726a416bd820f9","ref":"refs/heads/dist-array-gwas","pushedAt":"2024-09-23T12:12:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Use sgkit.distarray for gwas_linear_regression","shortMessageHtmlLink":"Use sgkit.distarray for gwas_linear_regression"}},{"before":"4e235f94797cd3c7497f004372ff0537705714f5","after":"195deccfbc785dd57f981ad215cabc6c7cf92cc8","ref":"refs/heads/upstream-build-fixes","pushedAt":"2024-09-19T09:10:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Explicitly install Zarr main branch (v2) rather than the default (v3)","shortMessageHtmlLink":"Explicitly install Zarr main branch (v2) rather than the default (v3)"}},{"before":"c1e7e6e7be60b6045e1e34c65a37850d7d260e8d","after":"4e235f94797cd3c7497f004372ff0537705714f5","ref":"refs/heads/upstream-build-fixes","pushedAt":"2024-09-19T08:52:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Temp change to run on PR","shortMessageHtmlLink":"Temp change to run on PR"}},{"before":null,"after":"c1e7e6e7be60b6045e1e34c65a37850d7d260e8d","ref":"refs/heads/upstream-build-fixes","pushedAt":"2024-09-19T08:49:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Install dask[dataframe] explicitly to fix upstream error","shortMessageHtmlLink":"Install dask[dataframe] explicitly to fix upstream error"}},{"before":"4588f19222d036741ce1f2e948112a3525198445","after":null,"ref":"refs/heads/dist-array-sample-stats","pushedAt":"2024-09-19T07:45:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"}},{"before":"f1fd95592fb5e38c5e9a33068a9b1b8ae4fe6550","after":null,"ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-17T15:16:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"}},{"before":"7094d3cf192dfc25ff69456ec7f1e71e7df2c264","after":"f1fd95592fb5e38c5e9a33068a9b1b8ae4fe6550","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-17T13:47:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Update changelog","shortMessageHtmlLink":"Update changelog"}},{"before":"21dc8ee26dd40132193ce891bf992e3fa597cc1e","after":"7094d3cf192dfc25ff69456ec7f1e71e7df2c264","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T14:40:41.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Use vcf2zarr in GWAS tutorial notebook\n\nBuild docs with Python 3.10\n\nUse %%bash for running vcf2zarr","shortMessageHtmlLink":"Use vcf2zarr in GWAS tutorial notebook"}},{"before":"801f7ccf2d7f358f4a33eaf10ded80d44e8dacc2","after":"21dc8ee26dd40132193ce891bf992e3fa597cc1e","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T14:33:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Try %%bash for all commands","shortMessageHtmlLink":"Try %%bash for all commands"}},{"before":"dddc908a9a6b0ca1a57eb80851166914ec800ad2","after":"801f7ccf2d7f358f4a33eaf10ded80d44e8dacc2","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T14:05:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Try %%bash","shortMessageHtmlLink":"Try %%bash"}},{"before":"5c2f2a4ed34a32d174c8ab9a0fb33c18aa49e35f","after":"dddc908a9a6b0ca1a57eb80851166914ec800ad2","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T13:55:41.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Temporarily disable some workflows while debugging","shortMessageHtmlLink":"Temporarily disable some workflows while debugging"}},{"before":"28edadb2b62306cce2ba862eebbb420d1c357ee5","after":"4588f19222d036741ce1f2e948112a3525198445","ref":"refs/heads/dist-array-sample-stats","pushedAt":"2024-09-16T13:05:40.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Add top-level astype function for Dask","shortMessageHtmlLink":"Add top-level astype function for Dask"}},{"before":"e8a789042ab5a7cb2bf33ce2e408cdeb3d01f150","after":"28edadb2b62306cce2ba862eebbb420d1c357ee5","ref":"refs/heads/dist-array-sample-stats","pushedAt":"2024-09-16T12:04:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Add top-level astype function for Dask","shortMessageHtmlLink":"Add top-level astype function for Dask"}},{"before":null,"after":"e8a789042ab5a7cb2bf33ce2e408cdeb3d01f150","ref":"refs/heads/dist-array-sample-stats","pushedAt":"2024-09-16T11:44:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Use sgkit.distarray for Hardy-Weinberg Equilibrium","shortMessageHtmlLink":"Use sgkit.distarray for Hardy-Weinberg Equilibrium"}},{"before":"c3ffc22c6a9747e04e2a19ecab10f01ebe5d23a9","after":"5c2f2a4ed34a32d174c8ab9a0fb33c18aa49e35f","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T10:55:08.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Build docs with Python 3.10","shortMessageHtmlLink":"Build docs with Python 3.10"}},{"before":"f5f96a7111f1a76bc6cf736decb44847f0ee3781","after":"c3ffc22c6a9747e04e2a19ecab10f01ebe5d23a9","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T10:46:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Build docs with Python 3.10","shortMessageHtmlLink":"Build docs with Python 3.10"}},{"before":null,"after":"f5f96a7111f1a76bc6cf736decb44847f0ee3781","ref":"refs/heads/gwas-tutorial-vcf2zarr","pushedAt":"2024-09-16T10:13:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Use vcf2zarr in GWAS tutorial notebook","shortMessageHtmlLink":"Use vcf2zarr in GWAS tutorial notebook"}},{"before":"ba3907856299d1573f4d70883db4c740f83babb5","after":null,"ref":"refs/heads/dist-array-variant-stats","pushedAt":"2024-09-16T09:24:28.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"}},{"before":"fe588fb15a2254efa337083041f76c793f886f99","after":null,"ref":"refs/heads/fix-docs-build","pushedAt":"2024-09-11T15:24:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"}},{"before":null,"after":"fe588fb15a2254efa337083041f76c793f886f99","ref":"refs/heads/fix-docs-build","pushedAt":"2024-09-11T13:25:03.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Update actions/upload-artifact to v4 in .github/workflows","shortMessageHtmlLink":"Update actions/upload-artifact to v4 in .github/workflows"}},{"before":null,"after":"ba3907856299d1573f4d70883db4c740f83babb5","ref":"refs/heads/dist-array-variant-stats","pushedAt":"2024-09-11T13:18:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Use sgkit.distarray for count_variant_alleles and variant_stats\n\nGet count_hom working with explicit sum reduction over samples","shortMessageHtmlLink":"Use sgkit.distarray for count_variant_alleles and variant_stats"}},{"before":"471d8378be57f88bb5b31fc3471159268e4b25df","after":null,"ref":"refs/heads/dist-array","pushedAt":"2024-09-10T10:13:34.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"}},{"before":"b1dd259b178e5dad1c34be08d62a4d29084df2a3","after":"471d8378be57f88bb5b31fc3471159268e4b25df","ref":"refs/heads/dist-array","pushedAt":"2024-09-09T11:15:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Don't allow chunking in ploidy dimension","shortMessageHtmlLink":"Don't allow chunking in ploidy dimension"}},{"before":"0ec6634fe28bbe00749bcde43fe5022e53f6985a","after":"b1dd259b178e5dad1c34be08d62a4d29084df2a3","ref":"refs/heads/dist-array","pushedAt":"2024-09-06T12:59:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Add GH actions workflow to test on Cubed","shortMessageHtmlLink":"Add GH actions workflow to test on Cubed"}},{"before":"899c7d9a58c72b3b5d29d45ad2a2b7357ed6174a","after":"0ec6634fe28bbe00749bcde43fe5022e53f6985a","ref":"refs/heads/dist-array","pushedAt":"2024-09-06T12:16:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Fix coverage","shortMessageHtmlLink":"Fix coverage"}},{"before":null,"after":"899c7d9a58c72b3b5d29d45ad2a2b7357ed6174a","ref":"refs/heads/dist-array","pushedAt":"2024-09-06T11:14:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Only rechunk in non-core dims in test_count_call_alleles__chunked","shortMessageHtmlLink":"Only rechunk in non-core dims in test_count_call_alleles__chunked"}},{"before":"a47aa018198bcdf4e2e213dc813129c253772de2","after":null,"ref":"refs/heads/numpy-2","pushedAt":"2024-09-02T13:20:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"}},{"before":"be61db6ea287bbe5c3633e5188af1c7de480b5ba","after":"e721eef1ff9e408289e250a3f5a278523c6641b2","ref":"refs/heads/xarray-apply-ufunc","pushedAt":"2024-09-02T13:05:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomwhite","name":"Tom White","path":"/tomwhite","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/85085?s=80&v=4"},"commit":{"message":"Change tests to only have multiple chunks in non-core dimensions\n\nRe-assign variable after calling xarray chunk\n\nUse xarray chunk rather than dask rechunk methods","shortMessageHtmlLink":"Change tests to only have multiple chunks in non-core dimensions"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yNFQxNDoxNToxNS4wMDAwMDBazwAAAAS_P0m-","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wMlQxMzowNToyNC4wMDAwMDBazwAAAASqnSnq"}},"title":"Activity ยท tomwhite/sgkit"}