A full spaCy pipeline and models for scientific/biomedical documents.
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Updated
Sep 15, 2024 - Python
A full spaCy pipeline and models for scientific/biomedical documents.
SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach
SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
BioGrakn Knowledge Graph
Towards Generalist Biomedical AI
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Full abstract relation extraction from biological texts with bi-affine relation attention networks
🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
TypeDB Bio: Biomedical Knowledge Graph
A unifying framework for biomedical research knowledge graphs
Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
Small Animal Magnetic Resonance Imaging via Python.
Flexible and powerful platform for biomedical information extraction from text
Weakly supervised medical named entity classification
This project is for Electrocardiogram(ECG) signal algorithms design and validation, include preprocessing, QRS-Complex detection, embedded system validation, ECG segmentation, label your machine learning dataset, and clinical trial...etc.
Website for Biomedical and Data (Bio-Dat) lab at Mahidol University, Thailand
HemoCell is a high-performance suspension code for simulating blood flows developed by the Computational Science Lab at the University of Amsterdam.
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