A course on genomics and bioinformatics from WU
-
Updated
Oct 4, 2024 - HTML
A course on genomics and bioinformatics from WU
Project Manager for NGS data analysis
Pipeline for Analysis of ChIP-Seq data
A pre-cooked version of our course
util scripts for various omics data analysis
Which ESR1 and PGR binding sites are functional?
R package for exploratory analysis of ChIPseq data
Genomic regions (e.g ChIPseq peaks) annotation with TxDB object
🖥️🧬 Materials for a Bioinformatics Workshop on ChIP-seq analysis, introduction to R and GenomicRanges.
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
cisVar scripts.
A snakemake based workflow for ChIPSeq data analysis
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
A technical note to describe the segmenter package
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
Package demo slides, "Chromatin Segmentation Analysis in R"
This is a repository to show my experience analyzing different kinds of Omics data.
Add a description, image, and links to the chipseq topic page so that developers can more easily learn about it.
To associate your repository with the chipseq topic, visit your repo's landing page and select "manage topics."