Sea lion urine comparison with spectral counting.
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Updated
Sep 2, 2019 - HTML
Sea lion urine comparison with spectral counting.
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
Config files for my GitHub profile.
Perform RNA-seq data analysis with edgeR package of bioconductor
Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.
A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Transcriptome Analysis of Heat and Drought-Stressed Wheat
The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
RNA sequencing processing and analysis to find differential expression
Various tutorials on how to analyse transcriptomic data.
Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)
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