RETIRED - Clinical phenotyping and ETL system
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Updated
Apr 9, 2018 - Java
RETIRED - Clinical phenotyping and ETL system
Introduction to PERMIT project resources
This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants
Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"
The OMOP Common Data Model(v6) implemented in Django (v3)
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records
Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes
How to: create drug codelists for recorded prescriptions
[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.
How to: create SNOMED CT codelists
Repository for the GA4GH phenopacket schema
Lecture slides on Electronic Health Record Data Quality
A software toolkit for the interconversion of standard data models for phenotypic data
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