Public archive for EpiCompare reports.

ENCODE reproducibility check, cutandrun & TIP-seq benchmark

Preprocessing pipeline for CUT&TAG data.

Public archive of reports generated using MotifPeeker R package

R code in R Markdown used for ucm genomes and genome analysis course

Personal website of Mehdi Foroozandeh. PhD student of computing science. machine learning and computational biology enthusiast

Standardized pipelines for processing epigenomic NGS data

Epiviz2 Web Application using the component library

HiGlass demo with Cistrome data sets.

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Processing, benchmarking and analysis of CUT&Tag against ENCODE ChIP-seq.

DNA Methylation Data Analysis using Command-line tools.

STAT 540 Spring 2017 team repository

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)

This repository contains data and functions related to computational epigenomics data analysis.

Materials used during #NGSchool2017

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline