SPAdes Genome Assembler
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Updated
Sep 18, 2024 - C++
SPAdes Genome Assembler
Ultra-fast and memory-efficient (meta-)genome assembler
Signal-level algorithms for MinION data
Master Algorithmic Programming Techniques. Learn algorithms through programming and advance your software engineering or data science career
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
A fast tool for hybrid genome assembly of long and short reads
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
Linear-time de novo Long Read Assembler
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
MetaCarvel: A scaffolder for metagenomes
this is repo about my solutions of problems in Data Structures and Algorithms Specialization in coursera site from algorithmic toolbox to Genome Assembly Programming Challenge
An efficient approach for constructing de-bruijn graph for genome assembly
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
Micro genome assembler. Uses BWT for seeding/pattern matching and a greedy score based aligner.
Fast and memory-efficient noisy read overlapping with KD-trees
GPU implementation of Abyss: A parallel assembler for short read sequence data
Some of my leisure activities.
Assembling Genome of phi x 174 from random reads using various techniques.
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