An antimicrobial resistance (AMR) dashboard.
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Updated
Sep 14, 2024 - JavaScript
An antimicrobial resistance (AMR) dashboard.
A GLUE project for hepatitis B virus (HBV).
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
Scripts used for analysis of single cell RNA-Seq data presented in Markos 2024 paper.
Supervised classification of various species DNA sequences using FFT and Machine Learning.
gapped-kmer based whole genome alignment software
My personal website
vcfdist: Accurately benchmarking phased variant calls
Extraction of genomic background set of DNA sequences for a given foreground set of sequences for subsequent de novo motif discovery
Structural variant calling tutorial using long-reads.
Comprehensive design of CRISPR gRNAs for nucleases and base editors
A tutorial on structural variant calling for short read sequencing data
A class of utilities for processing DNA sequencing reads in computational genomics
This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.
Bioinformatics on GCP, AWS or Azure
Machine Learning in Omics: Integration of Metagenomics and Metabolomics.
Analysis of SNP variants, derived from chip array genotyping and HTS sequencing
Genomics Carpentries Workshop at Rutgers University, April 25-26, 2024
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
Tool to estimate deltas for sequence sets and answer questions about relative contribution
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