kmers
Here are 34 public repositories matching this topic...
Coding problems from course 1 of the Bioinformatics specialization
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Feb 14, 2019 - Python
Alignment-Free phylogenetic tree construction from .fasta sequence files
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Jul 22, 2019 - C++
This is our implementation for D2 distance algorithm for k-mers.
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Jul 31, 2019 - Java
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
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Jul 3, 2020 - Python
reference-free base quality score recalibration
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Oct 16, 2020 - C++
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
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Jan 12, 2021 - C++
Evaluation of Statistical Linear Models for Genome Virus Classification
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Mar 15, 2021 - Jupyter Notebook
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Apr 26, 2021 - Scala
fast and comprehensive k-mer counting package
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Sep 27, 2021 - C++
The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.
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Jan 11, 2022 - Jupyter Notebook
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
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Mar 28, 2022 - Python
DNA CLASSIFICATION
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Jun 28, 2022 - Jupyter Notebook
Generate K-mer spectra to observe modalities of distributions
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Nov 18, 2022 - Python
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
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Feb 26, 2023 - Python
A collection of various biopython scripts.
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Mar 3, 2023 - Python
K-mer counting algorithms and count-data utilities for the BioJulia framework
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Apr 23, 2023 - Julia
Benchmarks and evaluation scripts for the Fulgor index.
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May 15, 2023 - Python
Convert python string to hashed kmers and back again
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Jul 21, 2023 - Cython
Bioinformatics 101 tool for counting unique k-length substrings in DNA
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Sep 25, 2023 - Rust
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