The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
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Updated
Sep 17, 2024 - Nextflow
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
CoMorMent-Containers
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp (S.sharp@exeter.ac.uk).
Software program for generating synthetic datasets for genotypes and phenotypes
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
Cross-Trait Penalized Regression using Summary Statistics
This repository contains the programming codes used in Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types https://advances.sciencemag.org/content/7/3/eabd9036
Python applications and libraries for working with PGS data and the PGS Catalog
Variational Inference of Polygenic Risk Scores
quincunx: an R package to query, download and wrangle PGS Catalog data
quincunx: an R package to query, download and wrangle PGS Catalog data
Julia implementation of Ge et al's PRScs
single cell informed polygenic risk scoring in Parkinson's disease
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