Merge pull request #20 from AlexsLemonade/jashapiro/slides

workshop/SCHEDULE.md

@@ -12,7 +12,7 @@ The planned schedule for the June 2024 Data Lab Virtual Training Workshop "Intro
 | Time        | Topic                             | Location |
 |-------------|--------------------------------------------|----------------|
 | **Day 1**   | **2024-06-10** <br> _**Introduction to R and the Tidyverse**_                 |
-| 12:00 PM    | Welcome, Introductions and Getting Started <br> [Workshop introduction slides (PDF)](#STUB)  | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
+| 12:00 PM    | Welcome, Introductions and Getting Started <br> [Workshop introduction slides (PDF)](../slides/2024-06-10_course-intro-scRNA.pdf)  | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
 | 1:00 PM     | [Introduction to base R](../completed-notebooks/intro-to-R-tidyverse/01-intro_to_base_R.nb.html) <br> [Introduction to R, RStudio, and RStudio Server slides (PDF)](../slides/2024-06-10_intro-to-r-rstudio.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
 | 2:30 PM     | [Introduction to `ggplot2`](../completed-notebooks/intro-to-R-tidyverse/02-intro_to_ggplot2.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
 | 3:30 PM     | [Introduction to the `tidyverse`](../completed-notebooks/intro-to-R-tidyverse/03-intro_to_tidyverse.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
@@ -35,15 +35,15 @@ The planned schedule for the June 2024 Data Lab Virtual Training Workshop "Intro
 | 5:00  PM    | *Adjourn for the day*             |
 | | |         |
 | **Day 3**   | **2024-06-12**  <br> _**Introduction to Single-cell RNA-seq, Day 2**_ |
-| 12:00 PM    | [Dimension reduction & visualization](../completed-notebooks/scRNA-seq/04-dimension_reduction_scRNA.nb.html) <br> [Dimension reduction and clustering slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
+| 12:00 PM    | [Dimension reduction & visualization](../completed-notebooks/scRNA-seq/04-dimension_reduction_scRNA.nb.html) <br> [Dimension reduction and clustering slides (PDF)](../slides/2024-06-12_dimension-reduction-clustering.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
 | 1:30 PM     | [Clustering and marker identification](../completed-notebooks/scRNA-seq/05-clustering_markers_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
 | 3:00 PM     | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
 |             | [Exercise: scRNA-seq clustering](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_02-scrna_clustering.Rmd) | |
 |             | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md) |
 | 5:00  PM    | *Adjourn for the day*             |
 | | |    |
 | **Day 4**   | **2024-06-13**  <br> _**Introduction to Single-cell RNA-seq, Day 3**_ | |
-| 12:00 PM    | [Cell type annotation](../completed-notebooks/scRNA-seq/06-celltype_annotation.nb.html) <br> [Cell type annotation slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
+| 12:00 PM    | [Cell type annotation](../completed-notebooks/scRNA-seq/06-celltype_annotation.nb.html) <br> [Cell type annotation slides (PDF)](../slides/2024-06-13_cell-type-assignment.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
 | 2:30 PM     | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
 |             | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md)|
 |             | [Exercise: scRNA-seq cell type annotation](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_03-celltype.Rmd) | |