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Add intro & day 3-4 slides #20

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Jun 3, 2024
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Add intro & day 3-4 slides #20

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b893c59
Add day 3 &4 slides
jashapiro Jun 3, 2024
4cf302c
update schedule links
jashapiro Jun 3, 2024
ec43bd9
rename
jashapiro Jun 3, 2024
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6 changes: 3 additions & 3 deletions workshop/SCHEDULE.md
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Expand Up @@ -12,7 +12,7 @@ The planned schedule for the June 2024 Data Lab Virtual Training Workshop "Intro
| Time | Topic | Location |
|-------------|--------------------------------------------|----------------|
| **Day 1** | **2024-06-10** <br> _**Introduction to R and the Tidyverse**_ |
| 12:00 PM | Welcome, Introductions and Getting Started <br> [Workshop introduction slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 12:00 PM | Welcome, Introductions and Getting Started <br> [Workshop introduction slides (PDF)](../slides/2024-06-10_course-intro-scRNA.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 1:00 PM | [Introduction to base R](../completed-notebooks/intro-to-R-tidyverse/01-intro_to_base_R.nb.html) <br> [Introduction to R, RStudio, and RStudio Server slides (PDF)](../slides/2024-06-10_intro-to-r-rstudio.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 2:30 PM | [Introduction to `ggplot2`](../completed-notebooks/intro-to-R-tidyverse/02-intro_to_ggplot2.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 3:30 PM | [Introduction to the `tidyverse`](../completed-notebooks/intro-to-R-tidyverse/03-intro_to_tidyverse.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
Expand All @@ -35,15 +35,15 @@ The planned schedule for the June 2024 Data Lab Virtual Training Workshop "Intro
| 5:00 PM | *Adjourn for the day* |
| | | |
| **Day 3** | **2024-06-12** <br> _**Introduction to Single-cell RNA-seq, Day 2**_ |
| 12:00 PM | [Dimension reduction & visualization](../completed-notebooks/scRNA-seq/04-dimension_reduction_scRNA.nb.html) <br> [Dimension reduction and clustering slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 12:00 PM | [Dimension reduction & visualization](../completed-notebooks/scRNA-seq/04-dimension_reduction_scRNA.nb.html) <br> [Dimension reduction and clustering slides (PDF)](../slides/2024-06-12_dimension-reduction-clustering.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 1:30 PM | [Clustering and marker identification](../completed-notebooks/scRNA-seq/05-clustering_markers_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 3:00 PM | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
| | [Exercise: scRNA-seq clustering](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_02-scrna_clustering.Rmd) | |
| | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md) |
| 5:00 PM | *Adjourn for the day* |
| | | |
| **Day 4** | **2024-06-13** <br> _**Introduction to Single-cell RNA-seq, Day 3**_ | |
| 12:00 PM | [Cell type annotation](../completed-notebooks/scRNA-seq/06-celltype_annotation.nb.html) <br> [Cell type annotation slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 12:00 PM | [Cell type annotation](../completed-notebooks/scRNA-seq/06-celltype_annotation.nb.html) <br> [Cell type annotation slides (PDF)](../slides/2024-06-13_cell-type-assignment.pdf) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 2:30 PM | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
| | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md)|
| | [Exercise: scRNA-seq cell type annotation](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_03-celltype.Rmd) | |
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