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AliciaSchep/README.md

Hi there 👋

Most of my work tied to my current and last few $JOB roles isn't public, but I developed some open source R and python packages during my time as a PhD student at Stanford in the Greenleaf Lab and have contributed to a few projects on the side since.

My graduate school projects are the ones in the pinned repositories that are part of the GreenleafLab organization. During graduate school I also developed as part of an internship with Genentech the iheatmapr package for interactive heatmaps in R.

Most of my side projects are around data visualization -- I've contributed to the vegawidget ecoysystem of R packages, and created the vegabrite package, which is a port of vega-lite to R via an auto-generated api.

Pinned Loading

  1. ropensci/iheatmapr ropensci/iheatmapr Public

    Complex, interactive heatmaps in R

    R 267 36

  2. vegawidget/vegabrite vegawidget/vegabrite Public

    Build vega-lite specs in R

    R 47 2

  3. gglabeller gglabeller Public

    Shiny gadget for labeling points on ggplot

    R 186 19

  4. GreenleafLab/chromVAR GreenleafLab/chromVAR Public

    chromatin Variability Across Regions (of the genome!)

    R 153 37

  5. GreenleafLab/NucleoATAC GreenleafLab/NucleoATAC Public

    nucleosome calling using ATAC-seq

    Python 106 31

  6. GreenleafLab/motifmatchr GreenleafLab/motifmatchr Public

    Fast motif matching in R

    C++ 41 11