Merge pull request #73 from Becksteinlab/remove-mmtf-test #31

	name: docs
	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	concurrency:
	group: "${{ github.ref }}-${{ github.head_ref }}"
	cancel-in-progress: true

	defaults:
	run:
	shell: bash -l {0}

	jobs:
	docs:
	if: "github.repository == 'Becksteinlab/propkatraj'"
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: setup_miniconda
	uses: conda-incubator/setup-miniconda@v3
	with:
	python-version: 3.11
	environment-file: docs/requirements.yaml
	add-pip-as-python-dependency: true
	architecture: x64

	miniforge-variant: Mambaforge
	use-mamba: true
	channels: conda-forge

	activate-environment: propkatrajdocs
	auto-update-conda: true
	auto-activate-base: false
	show-channel-urls: true

	- name: install dependencies
	run: \|
	pip install pandas MDAnalysis propka==3.1

	- name: install propkatraj
	run: \|
	pip install .

	- name: build docs
	run: \|
	cd docs && sphinx-build -T -E --keep-going -b html -D language=en sphinx html

	- name: deploy docs
	if: github.event_name != 'pull_request'
	uses: peaceiris/actions-gh-pages@v3
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./docs/html
	user_name: 'github-actions'
	user_email: 'github-action@users.noreply.github.com'

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