PHLOWER

decomPosition of the Hodge Laplacian for inferring trajectOries from floWs of cEll diffeRentiation

Installation

system dependences

macos:
  1. brew install suite-sparse
  2. brew install graphpviz

  Manually install pygraphviz:
    export PATH=$(brew --prefix graphviz):$PATH
    export CFLAGS="-I $(brew --prefix graphviz)/include"
    export LDFLAGS="-L $(brew --prefix graphviz)/lib"
    pip install pygraphviz

debian:
  1. apt install libsuitesparse-dev
  2. apt install graphviz libgraphviz-dev

conda:
  1. conda install conda-forge::suitesparse
  2. conda install conda-forge::python-graphviz

install phlower

git clone https://github.com/CostaLab/phlower.git
cd phlower
pip install .

import phlower