Fix usage of code deprecated Kokkos code, and updates ekat #2867

bartgol · 2024-06-13T23:08:49Z

We can now build with Kokkos_ENABLE_DEPRECATED_CODE_4=OFF. Also, brings in an update in ekat that suppresses the zillion warnings we were getting.

@jgfouca I did not set Kokkos_ENABLE_DEPRECATED_CODE_4=OFF in our test-all-scream builds. But maybe we should consider doing it at some point?

jgfouca · 2024-06-13T23:13:26Z

Am i going crazy? I don't see the ekat submodule being updated?

bartgol · 2024-06-14T15:44:55Z

Am i going crazy? I don't see the ekat submodule being updated?

I forgot to push the commit, but you should see it now.

E3SM-Autotester · 2024-06-14T16:39:58Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5545
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`a499d79`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`d58467b`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5812
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`a499d79`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`d58467b`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)

Pull Request Author: bartgol

E3SM-Autotester · 2024-06-14T17:43:01Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5545
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`a499d79`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`d58467b`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5812
Status: FAILED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`a499d79`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`d58467b`
TEST_REPO_ALIAS	SCREAM

SCREAM_PullRequest_Autotester_Mappy # 5545 PASSED (click to see last 100 lines of console output)


Starting SETUP for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
Finished SETUP for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 2.637112 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 procs
Finished SETUP for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 2.629569 seconds (PASS)
Finished SETUP for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 2.188267 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 procs
Starting SHAREDLIB_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Finished SETUP for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 2.683654 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Finished SETUP for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 2.610757 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 58.655183 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics with 16 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci in 57.924634 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci with 16 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 57.780927 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 16 procs
Finished SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 57.880013 seconds (PASS)
Starting MODEL_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 16 procs
Finished SHAREDLIB_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 80.534860 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 77.820914 seconds (PASS)
Finished SHAREDLIB_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 101.085867 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 227.700964 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 248.993364 seconds (PASS)
Starting MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 16 procs
Finished MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci in 230.316619 seconds (PASS)
Starting RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci in 1.042677 seconds (PEND). [COMPLETED 1 of 9]
Starting MODEL_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 16 procs
Finished MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 233.237072 seconds (PASS)
Starting RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 0.959750 seconds (PEND). [COMPLETED 2 of 9]
Starting MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 16 procs
Finished MODEL_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 238.038105 seconds (PASS)
Starting RUN for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 1.105483 seconds (PEND). [COMPLETED 3 of 9]
Starting MODEL_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu with 16 procs
Finished MODEL_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 292.705123 seconds (PASS)
Starting RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 4.382246 seconds (PEND). [COMPLETED 4 of 9]
Starting MODEL_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 16 procs
Finished MODEL_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 343.505542 seconds (PASS)
Starting RUN for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 4.940747 seconds (PEND). [COMPLETED 5 of 9]
Finished MODEL_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 365.793639 seconds (PASS)
Starting RUN for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu with 1 proc on interactive node and 16 procs on compute nodes
Finished RUN for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 0.922502 seconds (PEND). [COMPLETED 6 of 9]
Finished MODEL_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 358.849350 seconds (PASS)
Starting RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 0.930748 seconds (PEND). [COMPLETED 7 of 9]
Finished MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 502.436285 seconds (PASS)
Starting RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 0.928604 seconds (PEND). [COMPLETED 8 of 9]
Finished MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 606.973481 seconds (PASS)
Starting RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 1.063878 seconds (PEND). [COMPLETED 9 of 9]
Waiting for tests to finish
PASS ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1.C.20240614_112203_3omm20
PASS ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4.C.20240614_112203_3omm20
PASS ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5.C.20240614_112203_3omm20
PASS ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2.C.20240614_112203_3omm20
PASS ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu.C.20240614_112203_3omm20
PASS PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1.C.20240614_112203_3omm20
PASS SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci.C.20240614_112203_3omm20
PASS SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics.C.20240614_112203_3omm20
PASS SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3.C.20240614_112203_3omm20
test-scheduler took 939.6708149909973 seconds'
+ [[ 0 != 0 ]]
+ set +x
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 31639 killed;
[ssh-agent] Stopped.
Performing Post build task...
Match found for : : True
Logical operation result is TRUE
Running script  : #!/bin/bash -le
cd $WORKSPACE/${BUILD_ID}/
./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh
We're having issues with some test-launcher job hanging forever. So let's make sure we clean all penting test-launcher jobs
squeue -o"%.7i %u %40j" | grep e3sm-jenkins | grep test-launcher | awk '{ print $1 }' | xargs -r scancel
[SCREAM_PullRequest_Autotester_Mappy] $ /bin/bash -le /tmp/jenkins5292881469566712887.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: lbertag@sandia.gov

Finished: SUCCESS

SCREAM_PullRequest_Autotester_Weaver # 5812 FAILED (click to see last 100 lines of console output)


100% tests passed, 0 tests failed out of 140
Label Time Summary:

baseline_cmp        =  77.70 secproc (17 tests)

baseline_gen        = 219.29 secproc (19 tests)

bfbhash             =   0.71 secproc (1 test)

check               =   0.73 secproc (1 test)

cld                 =  50.25 secproc (6 tests)

cld_fraction        =   4.57 secproc (1 test)

cxx baseline_cmp    =   6.90 secproc (2 tests)

diagnostics         =  41.59 secproc (22 tests)

driver              =  87.49 secproc (12 tests)

dynamics            =   9.63 secproc (3 tests)

fail                =  29.05 secproc (5 tests)

io                  =  58.12 secproc (13 tests)

mam4_aci            =  39.19 secproc (4 tests)

mam4_optics         =   9.59 secproc (1 test)

nudging             =  14.17 secproc (2 tests)

p3                  =  95.77 secproc (10 tests)

p3_sk               =  41.66 secproc (2 tests)

physics             = 181.04 secproc (23 tests)

remap               =   2.75 secproc (1 test)

rrtmgp              =  64.81 secproc (11 tests)

shoc                =  62.05 secproc (11 tests)

spa                 =  13.13 secproc (4 tests)

surface_coupling    =   4.96 sec*proc (1 test)
Total Test time (real) = 681.32 sec
Testing '''bb2a7de9e74ca588a291a22c052aaad8281d5090''' for test '''full_sp_debug'''
RUN: taskset -c 52-103 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/full_sp_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/full_sp_debug -DBUILD_NAME_MOD=full_sp_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.0/gcc/11.3.0/openmpi/4.1.4/5ka6asw -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.0/gcc/11.3.0/openmpi/4.1.4/mdd6fth -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.4/52dibdr -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DSCREAM_DOUBLE_PRECISION=False -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_sp_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/full_sp_debug
Testing '''bb2a7de9e74ca588a291a22c052aaad8281d5090''' for test '''release'''
RUN: taskset -c 104-155 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/release/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/release -DBUILD_NAME_MOD=release -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.0/gcc/11.3.0/openmpi/4.1.4/5ka6asw -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.0/gcc/11.3.0/openmpi/4.1.4/mdd6fth -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.4/52dibdr -DCMAKE_BUILD_TYPE=Release -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/release" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/release
Testing '''bb2a7de9e74ca588a291a22c052aaad8281d5090''' for test '''full_debug'''
RUN: taskset -c 0-51 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/full_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/full_debug -DBUILD_NAME_MOD=full_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.0/gcc/11.3.0/openmpi/4.1.4/5ka6asw -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.0/gcc/11.3.0/openmpi/4.1.4/mdd6fth -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.4/52dibdr -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DKokkos_ENABLE_DEBUG_BOUNDS_CHECK=True -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx/ctest-build/full_debug

Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

92:mam4_aci_standalone_baseline_cmp
Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx

weaver failed'

errors='Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

92:mam4_aci_standalone_baseline_cmp

Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx

weaver failed'

SA_FAILURES_DETAILS+='Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

92:mam4_aci_standalone_baseline_cmp

Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx

weaver failed'

[[ 1 == 0 ]]
[[ weaver == \m\a\p\p\y ]]
set +x

######################################################

FAILS DETECTED:

SCREAM STANDALONE TESTING FAILED!

Build type full_sp_debug failed at testing time. Here's a list of failed tests:

92:mam4_aci_standalone_baseline_cmp

Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -i -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5812/scream/components/eamxx

weaver failed

######################################################

Build step 'Execute shell' marked build as failure

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash -le
cd $WORKSPACE/${BUILD_ID}/
./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh

[SCREAM_PullRequest_Autotester_Weaver] $ /bin/bash -le /tmp/jenkins13591245722078481428.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: lbertag@sandia.gov

Finished: FAILURE

jgfouca · 2024-06-14T18:00:38Z

Looks like weaver failed

bartgol · 2024-06-15T01:14:52Z

We still have the issue that test-all-scream does not really updates baselines when running through the AT (something is amiss with the master merge and the ahead/behind calculation). I am manually forcing baseline regen now.

E3SM-Autotester · 2024-06-15T06:17:50Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5549
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`83d015a`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`b7ba172`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5815
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`83d015a`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`b7ba172`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)

Pull Request Author: bartgol

E3SM-Autotester · 2024-06-15T07:03:49Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5549
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`83d015a`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`b7ba172`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 5815
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: AUTOMERGE;code cleanup
PULLREQUESTNUM	2867
SCREAM_SOURCE_REPO	https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA	`83d015a`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`b7ba172`
TEST_REPO_ALIAS	SCREAM

E3SM-Autotester · 2024-06-15T07:04:05Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

E3SM-Autotester · 2024-06-15T07:04:12Z

All Jobs Finished; status = PASSED, target_sha=b7ba1720d6845735ef93f9bc233d3a1eeb0024e7, However Inspection must be performed before merge can occur...

E3SM-Autotester · 2024-06-16T07:11:41Z

All Jobs Finished; status = PASSED, target_sha=b7ba1720d6845735ef93f9bc233d3a1eeb0024e7, However Inspection must be performed before merge can occur...

E3SM-Autotester · 2024-06-17T07:11:45Z

All Jobs Finished; status = PASSED, target_sha=b7ba1720d6845735ef93f9bc233d3a1eeb0024e7, However Inspection must be performed before merge can occur...

EAMxx: fix usage of code deprecated in Kokkos 4

76cbb78

bartgol added AT: AUTOMERGE Inform the autotester (AT) that it can merge this PR if reviewers approved, and tests pass code cleanup labels Jun 13, 2024

bartgol requested a review from jgfouca June 13, 2024 23:08

bartgol self-assigned this Jun 13, 2024

jgfouca previously approved these changes Jun 14, 2024

View reviewed changes

Update EKAT submodule

83d015a

bartgol dismissed jgfouca’s stale review via 83d015a June 15, 2024 01:13

bartgol force-pushed the bartgol/eamxx/remove-warnings-and-deprecated-code branch from a499d79 to 83d015a Compare June 15, 2024 01:13

bartgol requested a review from jgfouca June 15, 2024 01:13

jgfouca approved these changes Jun 17, 2024

View reviewed changes

jgfouca merged commit 687dd31 into master Jun 17, 2024
12 of 13 checks passed

jgfouca deleted the bartgol/eamxx/remove-warnings-and-deprecated-code branch June 17, 2024 16:46

Fix usage of code deprecated Kokkos code, and updates ekat #2867

Fix usage of code deprecated Kokkos code, and updates ekat #2867

Conversation

bartgol commented Jun 13, 2024

jgfouca commented Jun 13, 2024

bartgol commented Jun 14, 2024

E3SM-Autotester commented Jun 14, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

Using Repos:

E3SM-Autotester commented Jun 14, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

We're having issues with some test-launcher job hanging forever. So let's make sure we clean all penting test-launcher jobs

Total Test time (real) = 681.32 sec

Testing '''bb2a7de9e74ca588a291a22c052aaad8281d5090''' for test '''full_sp_debug'''

Testing '''bb2a7de9e74ca588a291a22c052aaad8281d5090''' for test '''release'''

Testing '''bb2a7de9e74ca588a291a22c052aaad8281d5090''' for test '''full_debug'''

jgfouca commented Jun 14, 2024

bartgol commented Jun 15, 2024

E3SM-Autotester commented Jun 15, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

Using Repos:

E3SM-Autotester commented Jun 15, 2024

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Jenkins Parameters

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Jenkins Parameters

E3SM-Autotester commented Jun 15, 2024

E3SM-Autotester commented Jun 15, 2024

E3SM-Autotester commented Jun 16, 2024

E3SM-Autotester commented Jun 17, 2024