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@EHSRB-BSRSE-Bioinformatics

EHSRB-BSRSE-Bioinformatics

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  1. bisulfite_pipeline bisulfite_pipeline Public

    R

  2. DEdisplay DEdisplay Public

    Display info about a differential expression experiment

    Python

  3. rnaseq_pipeline rnaseq_pipeline Public

    Python

  4. unify_temposeq_manifests unify_temposeq_manifests Public

    Code to standarize the format of the TempO-Seq probe manifests and fill in any missing ID values where possible

    R

  5. 2022_LeBlanc_et_al_BaP_DupSeq 2022_LeBlanc_et_al_BaP_DupSeq Public

    The code used in LeBlanc et al., 2022 to produce NMDS and NSC analysis

    R

  6. runscanner-docker runscanner-docker Public

    A containerized version of Run Scanner for MISO-LIMS

    Dockerfile

Repositories

Showing 10 of 11 repositories
  • test-data Public

    Static test data for running tests on the R-ODAF pipeline for reproducibility

    EHSRB-BSRSE-Bioinformatics/test-data’s past year of commit activity
    Shell 0 MIT 2 0 1 Updated Oct 4, 2024
  • unify_temposeq_manifests Public

    Code to standarize the format of the TempO-Seq probe manifests and fill in any missing ID values where possible

    EHSRB-BSRSE-Bioinformatics/unify_temposeq_manifests’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 20, 2024
  • R.ODAF.utils Public

    Functions used in processing transcriptomic data for the R-ODAF pipeline

    EHSRB-BSRSE-Bioinformatics/R.ODAF.utils’s past year of commit activity
    R 0 0 0 0 Updated Mar 22, 2024
  • test-data-dev Public Forked from EHSRB-BSRSE-Bioinformatics/test-data

    Static test data for running tests on the R-ODAF pipeline for reproducibility

    EHSRB-BSRSE-Bioinformatics/test-data-dev’s past year of commit activity
    Shell 0 MIT 2 0 0 Updated Mar 18, 2024
  • Beal_et_al_2023_lacZ Public

    R code and data necessary to reproduce the figures and analysis from Beal et al. 2023, a study on the mutational landscape of the lacZ gene.

    EHSRB-BSRSE-Bioinformatics/Beal_et_al_2023_lacZ’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Sep 8, 2023
  • clustergrammer-web Public Forked from MaayanLab/clustergrammer-web

    Create a clustergram visualization from a user defined network in tsv format.

    EHSRB-BSRSE-Bioinformatics/clustergrammer-web’s past year of commit activity
    JavaScript 0 MIT 9 0 0 Updated May 1, 2023
  • bisulfite_pipeline Public
    EHSRB-BSRSE-Bioinformatics/bisulfite_pipeline’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 19, 2023
  • DEdisplay Public

    Display info about a differential expression experiment

    EHSRB-BSRSE-Bioinformatics/DEdisplay’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 19, 2023
  • rnaseq_pipeline Public
    EHSRB-BSRSE-Bioinformatics/rnaseq_pipeline’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jan 19, 2023
  • 2022_LeBlanc_et_al_BaP_DupSeq Public

    The code used in LeBlanc et al., 2022 to produce NMDS and NSC analysis

    EHSRB-BSRSE-Bioinformatics/2022_LeBlanc_et_al_BaP_DupSeq’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 19, 2023
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