Here we present a base specification and guidelines in using bioinformatics containers for training purposes, including examples.
The different topics are:
- Galaxy container - Automatic workflow loading and execution inside a galaxy container
- Galaxy training container - Creating a new galaxy training container
- Nextflow container - Running Nextflow inside containers
Containers enable a common and controllable environment for running software and deals with some of the current problems during software development and distribution including dependencies and multiplatform usage.
More information about Docker.
Supported platforms:
| Topic | Description |
|---|---|
| Galaxy | Galaxy is an open source, web-based platform for data intensive biomedical research. |
| Galaxy Training | Tutorials developed and maintained by the worldwide Galaxy community. |
| Nextflow | Nextflow enables scalable and reproducible scientific workflows using software containers |
Visit the corresponding sub directories in this repository to find out more on how to built and use these containers.