Popular repositories Loading

1. mlreview_notebooks mlreview_notebooks Public

   Notebooks for "A high bias low-variance introduction to Machine Learning for physicists."

   Jupyter Notebook 65 54

2. community-simulator community-simulator Public

   Simulate microbial community batch culture experiments.

   Jupyter Notebook 40 13

3. scTOP scTOP Public

   A package for identifying cell phenotype from single-cell RNA-sequencing data.

   Jupyter Notebook 3 2

4. crossfeeding-transition crossfeeding-transition Public

   Code and data to accompany Marsland et al. (2018) "Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities"

   Jupyter Notebook 2 1

5. typical-random-ecosystems typical-random-ecosystems Public

   This is the code accompanying the manuscript: Cui, Wenping, Robert Marsland III, and Pankaj Mehta. "Diverse communities behave like typical random ecosystems." arXiv:1904.02610 (2019).

   Mathematica 2 1

6. microbiome-patterns microbiome-patterns Public

   Scripts and data to accompany Marsland, Cui and Mehta "A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns," bioRxiv 622829 (2019)

   Jupyter Notebook 1 5