Added CC pattern class per issue #394

Ran dosdp run per previous commit with current class substitution.
EnvironmentOntology · Oct 29, 2021 · e74d8aa · e74d8aa
1 parent 0064be2
commit e74d8aa
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Showing 3 changed files with 18 additions and 711 deletions.
diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl
@@ -74,6 +74,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_39285>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_47032>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_50335>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_50860>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_51143>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_53388>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58454>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_9171>))
@@ -3759,6 +3760,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3200076>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3200077>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3200078>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3200079>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3200080>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3400001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_3400002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_1>))
@@ -41937,6 +41939,13 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_3200079> "concentration of salt in soil"^^xsd:string)
 EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_3200079> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000033> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24866> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/ENVO_00001998>)))))
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_3200080> (concentration of nitrogen molecular entity in soil)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_3200080> "The concentration of nitrogen molecular entity when measured in soil."^^xsd:string)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_3200080> "soil nitrogen molecular entity concentration"^^xsd:string)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_3200080> "concentration of nitrogen molecular entity in soil"^^xsd:string)
+EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_3200080> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000033> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_51143> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/ENVO_00001998>)))))
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_3400001> (area of alpine tundra)
 
 AnnotationAssertion(Annotation(<http://purl.obolibrary.org/obo/IAO_0000119> <http://orcid.org/0000-0003-4808-4736>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://orcid.org/0000-0002-4366-3088>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_3400001> "An area of tundra which is present in a region subject to alpine conditions.")

diff --git a/src/envo/modules/chemical_concentration.csv b/src/envo/modules/chemical_concentration.csv
@@ -121,3 +121,4 @@ ENVO:3200076,,CHEBI:50860,organic molecular entity,ENVO:00001998,soil
 ENVO:3200077,,CHEBI:37376,tetraphosphorus decaoxide,ENVO:00001998,soil
 ENVO:3200078,,CHEBI:16189,sulfate,ENVO:00001998,soil
 ENVO:3200079,soil salinity,CHEBI:24866,salt,ENVO:00001998,soil
+ENVO:3200080,,CHEBI:51143,nitrogen molecular entity,ENVO:00001998,soil