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Crash when drawing PNG from gridstack #1059

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stefan-m-lenz opened this issue Nov 28, 2017 · 5 comments
Open

Crash when drawing PNG from gridstack #1059

stefan-m-lenz opened this issue Nov 28, 2017 · 5 comments

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@stefan-m-lenz
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stefan-m-lenz commented Nov 28, 2017 •
edited
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The following code (should show a pairs plot of variables in the dataset x) results in a crash of Julia:

using Gadfly
using DataFrames

filename = "testfile"
nvariables = 10
x = rand(100, nvariables)
labels = [string("x",i) for i = 1:nvariables]
plotdata = convert(DataFrame,
         Dict(zip(labels, [ x[:,i] for i = 1:nvariables ])))

grid = Matrix{Compose.Context}(nvariables, nvariables);
for i = 1:nvariables
   for j = 1:nvariables
      if i == j
         grid[i,j] = render(plot(plotdata, x = labels[i],
               Geom.histogram))
      else
         grid[i,j] = render(plot(plotdata, x = labels[i], y = labels[j],
               Geom.point))
      end
   end
end
draw(PNG(string(filename, ".png"), nvariables*60mm, nvariables*60mm), gridstack(grid))

I used Gadfly version 0.6.4, Cairo version 0.3.1 and Fontconfig version 0.1.1 on Windows 10 with Julia 0.6.

Execution of the code produces the following output:

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x1a779e2c -- cairo_surface_reference at C:.julia\v0.6\WinRPM\deps\usr\x86_64-w64-mingw32\sys-root\mingw\bin\libcairo-2.dll (unknown line)
while loading no file, in expression starting on line 0
cairo_surface_reference at C:.julia\v0.6\WinRPM\deps\usr\x86_64-w64-mingw32\sys-root\mingw\bin\libcairo-2.dll (unknown line)
pattern_get_surface at C:.julia\v0.6\Cairo\src\Cairo.jl:898
unknown function (ip: 000000001ACF1CB6)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_invoke at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:41
draw at C:.julia\v0.6\Compose\src\cairo_backends.jl:969
unknown function (ip: 000000001ACF12AA)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:440
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:472
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:472
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
drawpart at C:.julia\v0.6\Compose\src\container.jl:365
unknown function (ip: 000000001ACC1816)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
drawpart at C:.julia\v0.6\Compose\src\container.jl:365
unknown function (ip: 000000001ACC1816)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
drawpart at C:.julia\v0.6\Compose\src\container.jl:478
unknown function (ip: 000000001ACBCA5F)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
draw at C:.julia\v0.6\Compose\src\container.jl:331
unknown function (ip: 000000001ACBA3FA)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
do_call at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\interpreter.c:75
eval at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\interpreter.c:242
jl_interpret_toplevel_expr at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\interpreter.c:34
jl_toplevel_eval_flex at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\toplevel.c:577
jl_toplevel_eval_in at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\builtins.c:496
eval at .\boot.jl:235
unknown function (ip: 0000000061C963D5)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
eval_user_input at .\REPL.jl:66
unknown function (ip: 0000000061D12015)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
macro expansion at .\REPL.jl:97 [inlined]
#1 at .\event.jl:73
unknown function (ip: 0000000009D725A3)
jl_call_fptr_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:339 [inlined]
jl_call_method_internal at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia_internal.h:358 [inlined]
jl_apply_generic at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\gf.c:1933
jl_apply at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\julia.h:1424 [inlined]
start_task at /home/Administrator/buildbot/slave/package_win6_2-x64/build/src/home/Administrator/buildbot/slave/package_win6_2-x64/build/src\task.c:267
Allocations: 30372020 (Pool: 30368202; Big: 3818); GC: 69
@bjarthur
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wfm on OS X with Gadfly master

@stefan-m-lenz
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I tested it again on Linux (Ubuntu 16.04) with a fresh install of the same package versions. It also crashes, but without the verbose error message. It seems to me that the problem is in the current constallation of Gadfly, Compose and Cairo? I cannot test it on OS X.

@lobingera
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JuliaGraphics/Cairo.jl#209 seems similar

@stefan-m-lenz
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stefan-m-lenz commented Nov 28, 2017 •
edited
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I rebuilt Cairo, as suggested in JuliaGraphics/Cairo.jl#209. It had no effect

@lobingera
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Just a comment: i asked for a rebuilt to see more Error Messages ...

stefan-m-lenz added a commit to stefan-m-lenz/BoltzmannMachines.jl that referenced this issue Jan 8, 2018
@stefan-m-lenz
Attempt to fix BMPlots.plotpairs. Leads to julia crash. Issue created…
80cff9c 
… for Gadfly-package: GiovineItalia/Gadfly.jl#1059
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@bjarthur @lobingera @stefan-m-lenz