Fix component version when download from source (#931)

* add annotation to component downloaded

* change input file in the robot command

* copy file to intermediate file to compare later

* split else block into multiple lines

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Co-authored-by: Anita Caron <anitacaron@users.noreply.github.com>

template/src/ontology/Makefile.jinja2

@@ -555,8 +555,11 @@ component-download-{{ component.filename }}: | $(TMPDIR)
 	remove {% if component.base_iris is not none %}{% for iri in component.base_iris %}--base-iri {{iri}} {% endfor %}{% else %}--base-iri $(OBOBASE)/{{ project.id.upper() }} {% endif %}--axioms external --preserve-structure false --trim false \{% endif %}
 	annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) -o $(TMPDIR)/$@.owl; fi
 
-$(COMPONENTSDIR)/{{ component.filename }}:  component-download-{{ component.filename }}
-	if [ $(COMP) = true ] ; then if cmp -s $(TMPDIR)/component-download-{{ component.filename }}.owl $@ ; then echo "Component identical."; else echo "Component is different, updating." && cp $(TMPDIR)/component-download-{{ component.filename }}.owl $@; fi; fi
+$(COMPONENTSDIR)/{{ component.filename }}: component-download-{{ component.filename }}
+	if [ $(COMP) = true ]; then if cmp -s $(TMPDIR)/component-download-{{ component.filename }}.owl $(TMPDIR)/component-download-{{ component.filename }}.tmp.owl ; then echo "Component identical."; \
+      else echo "Component is different, updating." &&\
+		cp $(TMPDIR)/component-download-{{ component.filename }}.owl $(TMPDIR)/component-download-{{ component.filename }}.tmp.owl &&\
+		$(ROBOT) annotate -i $(TMPDIR)/component-download-{{ component.filename }}.owl --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) -o $@; fi; fi
 
 .PRECIOUS: $(COMPONENTSDIR)/{{ component.filename }}
 {% elif component.use_template %}