Update theme and intersphinx

[lilyminium]

No description provided.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (683f600) 87.55% compared to head (c0da093) 87.55%.

Additional details and impacted files

@@           Coverage Diff           @@
##           master     #127   +/-   ##
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  Coverage   87.55%   87.55%           
=======================================
  Files           5        5           
  Lines         747      747           
  Branches      127      127           
=======================================
  Hits          654      654           
  Misses         56       56           
  Partials       37       37           

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[IAlibay]

We should really use an author file...

[pep8speaks]

Hello @lilyminium! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file doc/source/conf.py:

Line 44:80: E501 line too long (109 > 79 characters)
Line 203:5: E265 block comment should start with '# '
Line 205:5: E265 block comment should start with '# '
Line 207:5: E265 block comment should start with '# '
Line 248:80: E501 line too long (85 > 79 characters)

Comment last updated at 2023-10-21 20:01:06 UTC

[orbeckst]

I'll have a look if I can get it to work as is.

[IAlibay]

@orbeckst I think this will now pick up the wrong yaml file

[orbeckst]

Locally I can't get the sphinx stuff to install in a Python 3.12 environment:

Pinned packages:
  - python 3.12.*


Could not solve for environment specs
The following package could not be installed
└─ mdanalysis-sphinx-theme >=1.0.1  is installable and it requires
   └─ sphinx >=6.2.1,<7.0 , which requires
      └─ docutils >=0.18.1,<0.20  with the potential options
         ├─ docutils [0.18.1|0.19] would require
         │  └─ python >=3.10,<3.11.0a0 , which can be installed;
         ├─ docutils [0.18.1|0.19] would require
         │  └─ python >=3.7,<3.8.0a0 , which can be installed;
         ├─ docutils [0.18.1|0.19] would require
         │  └─ python >=3.8,<3.9.0a0 , which can be installed;
         ├─ docutils [0.18.1|0.19] would require
         │  └─ python >=3.9,<3.10.0a0 , which can be installed;
         └─ docutils [0.18.1|0.19] would require
            └─ python >=3.11,<3.12.0a0 , which can be installed.

so need to do sphinx in 3.10 or so.

[orbeckst]

ok, need to pip-install sphinx_sitemap — somehow I had hoped that this was magically included in mdanalysis-sphinx-theme (but on reflection it's sensible that it isn't).

 Could not import extension sphinx_sitemap (exception: No module named 'sphinx_sitemap')

[orbeckst]

Thank you @lilyminium and also thanks @IAlibay !