Adding py3.9 to gh actions CI matrix #3245
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Codecov Report
@@ Coverage Diff @@
## develop #3245 +/- ##
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+ Coverage 92.81% 92.83% +0.01%
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Files 170 170
Lines 22811 22809 -2
Branches 3243 3242 -1
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+ Hits 21172 21174 +2
+ Misses 1591 1587 -4
Partials 48 48
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3.9: 17375 passed, 165 skipped, 4 xfailed, 2 xpassed, 39633 warnings Looks like we're good. I'll add a macOS entry and I guess we now cover py3.9 fully. |
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I'm not super into the idea that this has essentially ended up adding 2 extra entries to our CI matrix. But then I assume we will be able to drop 3.6 soon? |
orbeckst
approved these changes
Apr 27, 2021
lilyminium
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Apr 28, 2021
* Fixes MDAnalysis#2974 * Python 3.9 officially supported * Add Python 3.9 to testing matrix * Adds macOS CI entry, formalises 3.9 support
jbarnoud
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May 3, 2021
* added get_connections * modified tests for atoms.bonds/angles/dihedrals etc * modified parsers and things to use get_connections or bonds * updated CHANGELOG * pep8 * undo half of PR 3160 * add intra stuff * Update package/MDAnalysis/core/groups.py Co-authored-by: Jonathan Barnoud <jonathan@barnoud.net> * tighten up base class checking * update docstring * suppres warnings * Use absolute file paths in ITPParser (#3108) Fixes #3037 Co-authored-by: Lily Wang <31115101+lilyminium@users.noreply.github.com> * Adds aromaticity and Gasteiger charges guessers (#2926) Towards #2468 ## Work done in this PR * Add aromaticity and Gasteiger charges guessers which work via the RDKIT converter. * BLD: handle gcc on MacOS (#3234) Fixes #3109 ## Work done in this PR * gracefully handle the case where `gcc` toolchain in use on MacOS has been built from source using `clang` by `spack` (so it really is `gcc` in use, not `clang`) ## Notes * we could try to add regression testing, but a few problems: - `using_clang()` is inside `setup.py`, which probably can't be safely imported because it has unguarded statements/ code blocks that run right away - testing build issues is typically tricky with mocking, etc. (though in this case, probably just need to move `using_clang()` somewhere else and then test it against a variety of compiler metadata strings * Remove ParmEd Timestep writing "support" (#3240) Fixes #3031 * Adding py3.9 to gh actions CI matrix (#3245) * Fixes #2974 * Python 3.9 officially supported * Add Python 3.9 to testing matrix * Adds macOS CI entry, formalises 3.9 support * fix changelog * special metaclass * move function down * tidy code Co-authored-by: Jonathan Barnoud <jonathan@barnoud.net> Co-authored-by: Aditya Kamath <48089312+aditya-kamath@users.noreply.github.com> Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> Co-authored-by: Tyler Reddy <tyler.je.reddy@gmail.com> Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
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Fixes #2974
A lot of our optional deps are now 3.9 compatible, let's see how well this goes / what fails.
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