CI #352
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| # 3 am Tuesdays and Fridays | |
| - cron: "0 3 * * 2,5" | |
| concurrency: | |
| group: "${{ github.ref }}-${{ github.head_ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: "Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macOS-latest, ubuntu-latest, windows-latest] | |
| python-version: [3.8, 3.9, "3.10"] | |
| env_file: [env, ] | |
| include: | |
| - name: minimum_requirements | |
| os: ubuntu-latest | |
| python-version: 3.8 | |
| env_file: min | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on options: https://github.com/conda-incubator/setup-miniconda | |
| # An environment for the minimum versions | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: devtools/conda-envs/test_${{ matrix.env_file }}.yaml | |
| channels: conda-forge, defaults | |
| activate-environment: test | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| - name: Install package | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install . --no-deps | |
| conda list | |
| - name: Run tests | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| pytest -v --cov=membrane_curvature --cov-report=xml --color=yes membrane_curvature/tests/ | |
| - name: CodeCov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} | |
| fail_ci_if_error: True | |
| upstream_develop: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| latest-python : ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.latest-python }} | |
| - name: pip install membrane-curvature | |
| run: | | |
| pip install git+https://github.com/MDAnalysis/mdanalysis.git@develop#subdirectory=package | |
| python -m pip install . | |
| - name: install pytest | |
| run: | | |
| python -m pip install pytest | |
| - name: run tests | |
| run: | | |
| pytest --disable-pytest-warnings membrane_curvature/tests/ |