Update dependencies (#725)

Update dependencies:

* Bump uvicorn from 0.13.3 to 0.13.4
* Bump django from 3.1.6 to 3.1.7
* Bump lark-parser from 0.11.1 to 0.11.2
* Bump mkdocstrings from 0.14.0 to 0.15.0
* Bump pylint from 2.6.0 to 2.7.2
* Bump mkdocs-material from 6.2.8 to 7.0.3
* Bump jarvis-tools from 2020.11.27 to 2021.2.22
* Bump pymatgen from 2021.2.8.1 to 2021.2.16 (for Python 3.7+)

Install specific pymatgen depending on Python version.
This is due to the numpy sub-dependency.

Update setup.py with new dependencies.

Fix get_min_ver() test utility function for special dependencies.
This involves (at the moment) only `pymatgen`, which is python version
dependant, concerning which version to install.

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

requirements-client.txt

@@ -2,5 +2,6 @@ aiida-core==1.5.2
 ase==3.21.1
 numpy==1.20.1 ; python_version > '3.6'
 numpy==1.19.5 ; python_version < '3.7'
-pymatgen==2021.2.8.1
-jarvis-tools==2020.11.27
+pymatgen==2021.2.16; python_version > '3.6'
+pymatgen==2021.2.8.1; python_version < '3.7'
+jarvis-tools==2021.2.22

requirements-dev.txt

@@ -2,6 +2,6 @@ pytest==6.2.2
 pytest-cov==2.11.1
 codecov==2.1.11
 jsondiff==1.2.0
-pylint==2.6.0
+pylint==2.7.2
 pre-commit==2.10.1
 invoke==1.5.0

requirements-docs.txt

@@ -1,5 +1,5 @@
 mkdocs==1.1.2
 mkdocs-awesome-pages-plugin==2.5.0
-mkdocs-material==6.2.8
+mkdocs-material==7.0.3
 mkdocs-minify-plugin==0.4.0
-mkdocstrings==0.14.0
+mkdocstrings==0.15.0

requirements.txt

@@ -1,12 +1,12 @@
 fastapi==0.63.0
-lark-parser==0.11.1
+lark-parser==0.11.2
 pydantic==1.6.1
 email_validator==1.1.2
 requests==2.25.1
-uvicorn==0.13.3
+uvicorn==0.13.4
 pymongo==3.11.3
 mongomock==3.22.1
-django==3.1.6
+django==3.1.7
 elasticsearch-dsl==7.3.0
 Jinja2==2.11.3
 typing-extensions==3.7.4.3

setup.py

@@ -20,24 +20,27 @@
 django_deps = ["django>=2.2.9,<4.0"]
 elastic_deps = ["elasticsearch-dsl>=6.4,<8.0"]
 mongo_deps = ["pymongo~=3.11", "mongomock~=3.22"]
-server_deps = ["uvicorn~=0.13.3", "Jinja2~=2.11"] + mongo_deps
+server_deps = ["uvicorn~=0.13.4", "Jinja2~=2.11"] + mongo_deps
 
 # Client minded
 aiida_deps = ["aiida-core~=1.5.2"]
 ase_deps = ["ase~=3.21"]
 cif_deps = ["numpy~=1.19"]  # Keep at 1.19 for Python 3.6 support
 pdb_deps = cif_deps
-pymatgen_deps = ["pymatgen==2021.2.8.1"]
-jarvis_deps = ["jarvis-tools==2020.11.27"]
+pymatgen_deps = [
+    "pymatgen==2021.2.8.1;python_version<'3.7'",
+    "pymatgen==2021.2.16;python_version>'3.6'",
+]
+jarvis_deps = ["jarvis-tools==2021.2.22"]
 client_deps = cif_deps
 
 # General
 docs_deps = [
     "mkdocs~=1.1",
     "mkdocs-awesome-pages-plugin~=2.5",
-    "mkdocs-material~=6.2",
+    "mkdocs-material~=7.0",
     "mkdocs-minify-plugin~=0.4.0",
-    "mkdocstrings~=0.14.0",
+    "mkdocstrings~=0.15.0",
 ]
 testing_deps = [
     "pytest~=6.2",
@@ -46,7 +49,7 @@
     "jsondiff~=1.2",
 ] + server_deps
 dev_deps = (
-    ["pylint~=2.6", "pre-commit~=2.10", "invoke~=1.5"]
+    ["pylint~=2.7", "pre-commit~=2.10", "invoke~=1.5"]
     + docs_deps
     + testing_deps
     + client_deps
@@ -88,12 +91,12 @@
     ],
     python_requires=">=3.6",
     install_requires=[
-        "lark-parser~=0.11.1",
+        "lark-parser~=0.11.2",
         "fastapi~=0.63.0",
         "pydantic~=1.6.1",
         "email_validator~=1.1",
         "requests~=2.25",
-        'typing-extensions~=3.7;python_version<"3.8"',
+        "typing-extensions~=3.7;python_version<'3.8'",
     ],
     extras_require={
         "all": all_deps,

tests/adapters/structures/utils.py

@@ -9,6 +9,6 @@ def get_min_ver(dependency: str) -> str:
         for line in setup_file.readlines():
             min_ver = re.findall(fr'"{dependency}((=|!|<|>|~)=|>|<)(.+)"', line)
             if min_ver:
-                return min_ver[0][2]
+                return min_ver[0][2].split(";")[0]
         else:
             raise RuntimeError(f"Cannot find {dependency} dependency in setup.py")