Update dependencies

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ default_language_version:
 
 repos:
   - repo: https://github.com/ambv/black
-    rev: 21.11b1
+    rev: 21.12b0
     hooks:
     - id: black
       name: Blacken

optimade/server/entry_collections/mongo.py

@@ -10,7 +10,13 @@
 
 
 if CONFIG.database_backend.value == "mongodb":
-    from pymongo import MongoClient
+    from pymongo import MongoClient, version_tuple
+
+    if version_tuple[0] < 4:
+        LOGGER.warning(
+            "Support for pymongo<=3 (and thus MongoDB v3) is deprecated and will be "
+            "removed in the next minor release."
+        )
 
     LOGGER.info("Using: Real MongoDB (pymongo)")
 

requirements-client.txt

@@ -1,5 +1,5 @@
 aiida-core==1.6.5
-ase==3.22.0
+ase==3.22.1
 jarvis-tools==2021.10.3
 numpy==1.21.4
 pymatgen==2021.3.9

requirements-dev.txt

@@ -1,7 +1,7 @@
 codecov==2.1.12
 invoke==1.6.0
 jsondiff==1.3.0
-pre-commit==2.15.0
-pylint==2.12.1
+pre-commit==2.16.0
+pylint==2.12.2
 pytest==6.2.5
 pytest-cov==3.0.0

requirements-docs.txt

@@ -1,5 +1,5 @@
 mike==1.1.2
 mkdocs==1.2.3
 mkdocs-awesome-pages-plugin==2.6.1
-mkdocs-material==8.0.1
+mkdocs-material==8.0.4
 mkdocstrings==0.16.2

requirements.txt

@@ -5,7 +5,7 @@ Jinja2==3.0.3
 lark-parser==0.12.0
 mongomock==3.23.0
 pydantic==1.8.2
-pymongo==3.12.1
+pymongo==4.0
 pyyaml==5.4
 requests==2.26.0
 typing-extensions==4.0.0;python_version<'3.8'

setup.py

@@ -18,7 +18,7 @@
 # Dependencies
 # Server minded
 elastic_deps = ["elasticsearch-dsl~=6.4,<7.0"]
-mongo_deps = ["pymongo~=3.12", "mongomock~=3.23"]
+mongo_deps = ["pymongo>=3.12.1,<5", "mongomock~=3.23"]
 server_deps = [
     "uvicorn~=0.15",
     "Jinja2>=2.10,<4.0",
@@ -49,7 +49,7 @@
     "jsondiff~=1.3",
 ] + server_deps
 dev_deps = (
-    ["pylint~=2.12", "pre-commit~=2.15", "invoke~=1.6"]
+    ["pylint~=2.12", "pre-commit~=2.16", "invoke~=1.6"]
     + docs_deps
     + testing_deps
     + client_deps