Plotly: Solves JS issue via help from readthedocs/readthedocs.org#4367

_static/custom.css

@@ -0,0 +1 @@
+.ignore-css{all:unset !important;}

_static/js/theme.js

@@ -0,0 +1,262 @@
+// The MIT License (MIT)
+
+// Copyright (c) 2013-2018 Dave Snider, Read the Docs, Inc. & contributors
+
+// Permission is hereby granted, free of charge, to any person obtaining a copy of
+// this software and associated documentation files (the "Software"), to deal in
+// the Software without restriction, including without limitation the rights to
+// use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+// the Software, and to permit persons to whom the Software is furnished to do so,
+// subject to the following conditions:
+
+// The above copyright notice and this permission notice shall be included in all
+// copies or substantial portions of the Software.
+
+// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+// FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+// COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+// IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+// CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+// var jQuery = (typeof(window) != 'undefined') ? window.jQuery : require('jquery');
+
+// Sphinx theme nav state
+function ThemeNav () {
+
+    var nav = {
+        navBar: null,
+        win: null,
+        winScroll: false,
+        winResize: false,
+        linkScroll: false,
+        winPosition: 0,
+        winHeight: null,
+        docHeight: null,
+        isRunning: false
+    };
+
+    nav.enable = function (withStickyNav) {
+        var self = this;
+
+        // TODO this can likely be removed once the theme javascript is broken
+        // out from the RTD assets. This just ensures old projects that are
+        // calling `enable()` get the sticky menu on by default. All other cals
+        // to `enable` should include an argument for enabling the sticky menu.
+        if (typeof(withStickyNav) == 'undefined') {
+            withStickyNav = true;
+        }
+
+        if (self.isRunning) {
+            // Only allow enabling nav logic once
+            return;
+        }
+
+        self.isRunning = true;
+        jQuery(function ($) {
+            self.init($);
+
+            self.reset();
+            self.win.on('hashchange', self.reset);
+
+            if (withStickyNav) {
+                // Set scroll monitor
+                self.win.on('scroll', function () {
+                    if (!self.linkScroll) {
+                        if (!self.winScroll) {
+                            self.winScroll = true;
+                            requestAnimationFrame(function() { self.onScroll(); });
+                        }
+                    }
+                });
+            }
+
+            // Set resize monitor
+            self.win.on('resize', function () {
+                if (!self.winResize) {
+                    self.winResize = true;
+                    requestAnimationFrame(function() { self.onResize(); });
+                }
+            });
+
+            self.onResize();
+        });
+
+    };
+
+    // TODO remove this with a split in theme and Read the Docs JS logic as
+    // well, it's only here to support 0.3.0 installs of our theme.
+    nav.enableSticky = function() {
+        this.enable(true);
+    };
+
+    nav.init = function ($) {
+        var doc = $(document),
+            self = this;
+
+        this.navBar = $('div.wy-side-scroll:first');
+        this.win = $(window);
+
+        // Set up javascript UX bits
+        $(document)
+            // Shift nav in mobile when clicking the menu.
+            .on('click', "[data-toggle='wy-nav-top']", function() {
+                $("[data-toggle='wy-nav-shift']").toggleClass("shift");
+                $("[data-toggle='rst-versions']").toggleClass("shift");
+            })
+
+            // Nav menu link click operations
+            .on('click', ".wy-menu-vertical .current ul li a", function() {
+                var target = $(this);
+                // Close menu when you click a link.
+                $("[data-toggle='wy-nav-shift']").removeClass("shift");
+                $("[data-toggle='rst-versions']").toggleClass("shift");
+                // Handle dynamic display of l3 and l4 nav lists
+                self.toggleCurrent(target);
+                self.hashChange();
+            })
+            .on('click', "[data-toggle='rst-current-version']", function() {
+                $("[data-toggle='rst-versions']").toggleClass("shift-up");
+            })
+
+        // Make tables responsive
+        $("table.docutils:not(.field-list,.footnote,.citation)")
+            .wrap("<div class='wy-table-responsive'></div>");
+
+        // Add extra class to responsive tables that contain
+        // footnotes or citations so that we can target them for styling
+        $("table.docutils.footnote")
+            .wrap("<div class='wy-table-responsive footnote'></div>");
+        $("table.docutils.citation")
+            .wrap("<div class='wy-table-responsive citation'></div>");
+
+        // Add expand links to all parents of nested ul
+        $('.wy-menu-vertical ul').not('.simple').siblings('a').each(function () {
+            var link = $(this);
+                expand = $('<span class="toctree-expand"></span>');
+            expand.on('click', function (ev) {
+                self.toggleCurrent(link);
+                ev.stopPropagation();
+                return false;
+            });
+            link.prepend(expand);
+        });
+    };
+
+    nav.reset = function () {
+        // Get anchor from URL and open up nested nav
+        var anchor = encodeURI(window.location.hash) || '#';
+
+        try {
+            var vmenu = $('.wy-menu-vertical');
+            var link = vmenu.find('[href="' + anchor + '"]');
+            if (link.length === 0) {
+                // this link was not found in the sidebar.
+                // Find associated id element, then its closest section
+                // in the document and try with that one.
+                var id_elt = $('.document [id="' + anchor.substring(1) + '"]');
+                var closest_section = id_elt.closest('div.section');
+                link = vmenu.find('[href="#' + closest_section.attr("id") + '"]');
+                if (link.length === 0) {
+                    // still not found in the sidebar. fall back to main section
+                    link = vmenu.find('[href="#"]');
+                }
+            }
+            // If we found a matching link then reset current and re-apply
+            // otherwise retain the existing match
+            if (link.length > 0) {
+                $('.wy-menu-vertical .current').removeClass('current');
+                link.addClass('current');
+                link.closest('li.toctree-l1').addClass('current');
+                link.closest('li.toctree-l1').parent().addClass('current');
+                link.closest('li.toctree-l1').addClass('current');
+                link.closest('li.toctree-l2').addClass('current');
+                link.closest('li.toctree-l3').addClass('current');
+                link.closest('li.toctree-l4').addClass('current');
+                link[0].scrollIntoView();
+            }
+        }
+        catch (err) {
+            console.log("Error expanding nav for anchor", err);
+        }
+
+    };
+
+    nav.onScroll = function () {
+        this.winScroll = false;
+        var newWinPosition = this.win.scrollTop(),
+            winBottom = newWinPosition + this.winHeight,
+            navPosition = this.navBar.scrollTop(),
+            newNavPosition = navPosition + (newWinPosition - this.winPosition);
+        if (newWinPosition < 0 || winBottom > this.docHeight) {
+            return;
+        }
+        this.navBar.scrollTop(newNavPosition);
+        this.winPosition = newWinPosition;
+    };
+
+    nav.onResize = function () {
+        this.winResize = false;
+        this.winHeight = this.win.height();
+        this.docHeight = $(document).height();
+    };
+
+    nav.hashChange = function () {
+        this.linkScroll = true;
+        this.win.one('hashchange', function () {
+            this.linkScroll = false;
+        });
+    };
+
+    nav.toggleCurrent = function (elem) {
+        var parent_li = elem.closest('li');
+        parent_li.siblings('li.current').removeClass('current');
+        parent_li.siblings().find('li.current').removeClass('current');
+        parent_li.find('> ul li.current').removeClass('current');
+        parent_li.toggleClass('current');
+    }
+
+    return nav;
+};
+
+module.exports.ThemeNav = ThemeNav();
+
+if (typeof(window) != 'undefined') {
+    window.SphinxRtdTheme = {
+        Navigation: module.exports.ThemeNav,
+        // TODO remove this once static assets are split up between the theme
+        // and Read the Docs. For now, this patches 0.3.0 to be backwards
+        // compatible with a pre-0.3.0 layout.html
+        StickyNav: module.exports.ThemeNav,
+    };
+}
+
+
+// requestAnimationFrame polyfill by Erik Möller. fixes from Paul Irish and Tino Zijdel
+// https://gist.github.com/paulirish/1579671
+// MIT license
+
+(function() {
+    var lastTime = 0;
+    var vendors = ['ms', 'moz', 'webkit', 'o'];
+    for(var x = 0; x < vendors.length && !window.requestAnimationFrame; ++x) {
+        window.requestAnimationFrame = window[vendors[x]+'RequestAnimationFrame'];
+        window.cancelAnimationFrame = window[vendors[x]+'CancelAnimationFrame']
+                                   || window[vendors[x]+'CancelRequestAnimationFrame'];
+    }
+
+    if (!window.requestAnimationFrame)
+        window.requestAnimationFrame = function(callback, element) {
+            var currTime = new Date().getTime();
+            var timeToCall = Math.max(0, 16 - (currTime - lastTime));
+            var id = window.setTimeout(function() { callback(currTime + timeToCall); },
+              timeToCall);
+            lastTime = currTime + timeToCall;
+            return id;
+        };
+
+    if (!window.cancelAnimationFrame)
+        window.cancelAnimationFrame = function(id) {
+            clearTimeout(id);
+        };
+}());

_templates/layout.html

@@ -0,0 +1,6 @@
+{% extends "!layout.html" %}
+{% block extrahead %}
+  {%- for scriptfile in extra_js_files %}
+    {{ js_tag(scriptfile) }}
+  {%- endfor %}
+{% endblock %}

conf.py

@@ -108,7 +108,6 @@
     html_theme = 'qcarchive_sphinx_theme'
 except ModuleNotFoundError:
     html_theme = 'sphinx_rtd_theme'
-# html_theme="alabaster"
 
 # Theme options are theme-specific and customize the look and feel of a theme
 # further.  For a list of options available for each theme, see the
@@ -207,9 +206,12 @@
                        'qcengine': ('https://qcengine.readthedocs.io/en/latest/', None),
                        'qcfractal': ('https://qcfractal.readthedocs.io/en/latest/', None),
                       }
+intersphinx_mapping = {} # Currently not used
 
 # -- Options for todo extension ----------------------------------------------
 
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = True
 
+html_context = {'extra_js_files': ["https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"]}
+