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drop sys breakdown in favor of covmat #473

drop sys breakdown in favor of covmat

drop sys breakdown in favor of covmat #473

Workflow file for this run

# A single CI script with github workflow.
name: Automatic Fit
# start job only for PRs when a label is added.
on:
pull_request:
types: [labeled]
# some general variables
env:
N3FIT_MAXNREP: 20 # total number of replicas to fit
POSTFIT_NREP: 16 # requested replicas for postfit
REFERENCE_SET: NNBOT-a5240b65e-2023-12-12 # reference set for vp
CONDA_PY: 310
PYTHONHASHSEED: "0"
jobs:
build:
# perform build only if PR has run-fit-bot label
if: contains(github.event.pull_request.labels.*.name, 'run-fit-bot')
strategy:
matrix:
os: [ubuntu-latest]
python-version: ["3.10"]
runs-on: ${{ matrix.os }}
env:
NETRC_FILE: ${{ secrets.NETRC_FILE }}
steps:
- uses: actions/checkout@v1
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install SSH key
uses: shimataro/ssh-key-action@v2
with:
key: ${{ secrets.NNPDF_SSA }}
name: id_rsa
known_hosts: ${{ secrets.NNPDF_HOSTS_KEY }}
- name: Setup conda and install conda-build
shell: bash -l {0}
run: |
echo "$NETRC_FILE" | base64 --decode > ~/.netrc
conda config --append channels conda-forge
conda config --prepend channels https://packages.nnpdf.science/public
conda config --set show_channel_urls true
conda install boa --yes
- name: Build recipe
shell: bash -l {0}
run: |
CONDA_PY=$CONDA_PY conda mambabuild --no-test -q conda-recipe
# install local build
- name: Installing NNPDF conda package
shell: bash -l {0}
run: |
conda update -n base conda
conda install -n base conda-libmamba-solver
conda config --set solver libmamba
conda create -n nnpdfenv -c file:///usr/share/miniconda/envs/test/conda-bld/linux-64/ nnpdf
# create fancy runcards
- name: Preparing fit runcard
run: |
# set runcard name
export COMMIT=`git rev-parse --short HEAD`
export TIMESTAMP=`date --iso-8601`
echo "RUNCARD=NNBOT-$COMMIT-$TIMESTAMP" >> $GITHUB_ENV
echo "RUNFOLDER=n3fit/runcards/examples" >> $GITHUB_ENV
# downloading theory and t0
- name: Downloading requirements
shell: bash -l {0}
run: |
conda activate nnpdfenv
cd $RUNFOLDER
cp developing.yml $RUNCARD.yml
vp-setupfit $RUNCARD.yml
# running n3fit replicas
- name: Running n3fit
shell: bash -l {0}
run: |
conda activate nnpdfenv
cd $RUNFOLDER
for ((i=1; i<=$N3FIT_MAXNREP; i+=1)); do n3fit $RUNCARD.yml $i ; done
# performing DGLAP
- name: Running dglap
shell: bash -l {0}
run: |
conda activate nnpdfenv
cd $RUNFOLDER
evolven3fit_new evolve $RUNCARD
# running postfit
- name: Postfit and upload fit
shell: bash -l {0}
run: |
conda activate nnpdfenv
cd $RUNFOLDER
postfit $POSTFIT_NREP $RUNCARD
res=$(vp-upload $RUNCARD 2>&1)
echo ${res}
while echo ${res} | grep ERROR >/dev/null
do
sleep 30s
res=$(vp-upload $RUNCARD 2>&1)
done
url=$( echo "${res}" | grep https )
echo "FIT_URL=$url" >> $GITHUB_ENV
# running validphys report
- name: Building and upload report
shell: bash -l {0}
run: |
conda activate nnpdfenv
vp-comparefits $RUNCARD $REFERENCE_SET \
--title "Automatic check fit $RUNCARD" \
--author bot \
--keywords run-fit-bot \
--thcovmat_if_present
url=$(vp-upload output/ 2>&1 | grep https)
echo "REPORT_URL=$url" >> $GITHUB_ENV
# write reminder
- name: Write summary on PR
uses: unsplash/comment-on-pr@master
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
msg: |
Greetings from your nice fit :robot: !
I have good news for you, I just finished my tasks:
- Fit Name: ${{ env.RUNCARD }}
- Fit Report: ${{ env.REPORT_URL }}
- Fit Data: ${{ env.FIT_URL }}
Check the report **carefully**, and please buy me a :coffee: , or better, a GPU :wink:!