Merge pull request #1082 from SpiNNakerManchester/split_synapse_neuro…

…n_models

Split synapse neuron models

neural_modelling/Makefile

@@ -18,7 +18,9 @@ BUILDS = synapse_expander \
          spike_source/poisson \
          delay_extension \
          robot_motor_control \
-         neuron
+         neuron_only \
+         synapse_only \
+         neuron 
 
 DIRS = $(BUILDS:%=makefiles/%)
 

neural_modelling/makefiles/neuron_only/IF_cond_exp_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_conductance.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_exponential_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_cond_exp_stoc_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_conductance.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_maass_stochastic.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_exponential_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_curr_alpha_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_alpha_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_curr_delta_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_delta.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_delta_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_curr_exp_ca2_adaptive_neuron/Makefile

@@ -0,0 +1,26 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_exponential_impl.h
+ADDITIONAL_INPUT_H = $(NEURON_DIR)/neuron/additional_inputs/additional_input_ca2_adaptive_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_curr_exp_dual_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_dual_excitatory_exponential_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_curr_exp_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_exponential_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IF_curr_exp_sEMD_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_semd_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IZK_cond_exp_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_izh_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_izh_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_conductance.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_exponential_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/IZK_curr_exp_neuron/Makefile

@@ -0,0 +1,25 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = $(notdir $(CURDIR))
+
+NEURON_MODEL = $(NEURON_DIR)/neuron/models/neuron_model_izh_impl.c
+NEURON_MODEL_H = $(NEURON_DIR)/neuron/models/neuron_model_izh_impl.h
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_standard.h
+THRESHOLD_TYPE_H = $(NEURON_DIR)/neuron/threshold_types/threshold_type_static.h
+SYNAPSE_TYPE_H = $(NEURON_DIR)/neuron/synapse_types/synapse_types_exponential_impl.h
+
+include ../neuron_build.mk

neural_modelling/makefiles/neuron_only/Makefile

@@ -0,0 +1,32 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+MODELS = IF_curr_exp_neuron\
+         IZK_curr_exp_neuron\
+         IF_cond_exp_neuron\
+         IZK_cond_exp_neuron\
+         IF_curr_exp_ca2_adaptive_neuron\
+         IF_curr_exp_dual_neuron\
+         IF_curr_exp_sEMD_neuron\
+         IF_curr_delta_neuron\
+         IF_curr_alpha_neuron\
+         IF_cond_exp_stoc_neuron\
+         external_device_lif_control_neuron
+
+all:
+	for d in $(MODELS); do $(MAKE) -C $$d || exit $$?; done
+
+clean:
+	for d in $(MODELS); do $(MAKE) -C $$d clean || exit $$?; done

neural_modelling/makefiles/neuron_only/external_device_lif_control_neuron/Makefile

@@ -0,0 +1,22 @@
+# Copyright (c) 2017-2019 The University of Manchester
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+APP = external_device_lif_control_neuron
+
+OTHER_SOURCES = $(NEURON_DIR)/neuron/models/neuron_model_lif_impl.c
+INPUT_TYPE_H = $(NEURON_DIR)/neuron/input_types/input_type_current.h
+NEURON_IMPL_H = $(NEURON_DIR)/neuron/implementations/neuron_impl_external_devices.h
+
+include ../neuron_build.mk