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Update vignette
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adeschen committed Apr 17, 2024
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5 changes: 2 additions & 3 deletions vignettes/enrichViewNet.Rmd
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Expand Up @@ -666,8 +666,7 @@ The first step has been presented in the previous section.

An enrichment map can show enrichment results from multiple enrichment
analyses. A different color is used for each analysis. This enables to
highlight the enriched terms shared by multiples analyses as well as
analysis specific network of terms.
highlight the similarities and differences between the analyses.


```{r emapMulti01, echo=TRUE, warning=FALSE, message=FALSE, collapse=F, eval=TRUE, fig.cap="An enrichment map containing Kegg enrichment results for 2 different experiments.", fig.align="center"}
Expand Down Expand Up @@ -740,7 +739,7 @@ The output of the _createEnrichMapMultiBasic()_ function is a _ggplot_ object.
This means that the graph can be personalized. For example, the default
colors, legend title and legend font can be changed:

```{r emapMultiCustom, echo=TRUE, warning=FALSE, message=FALSE, collapse=F, eval=TRUE, fig.cap="An enrichment map using KEGG terms from 2 enrichment analyses with personalized colors."}
```{r emapMultiCustom, echo=TRUE, warning=FALSE, message=FALSE, collapse=F, eval=TRUE, fig.cap="An enrichment map using KEGG terms from 2 enrichment analyses with personalized colors and legend."}
## Required library
library(ggplot2)
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