Enhance deployment scripts

[syphax-bouazzouni]

To change/add

Change the project structure from /servers/services to /services/servers

• UI
• API
• CRON
• FAIRNESS

Add development and stage environments

• agroportal (for production)
• bioportal (for production)
• stageportal (for release staging before sent to production)
• testportal (for development and testing)

add/enhance scripts to deploy java apps

• scripts to use maven to build the sources files in the servers (maven need to be installed servers-
• now the java apps source code are fetched in "/srv/ontoportal/tomcat path"

add ncbo_proxy deployment scripts

• agroportal
• bioportal

add annotators deployment scripts

• agroportal
• bioportal
• stageportal
• testportal

Update documentation

• update READMEs
• Add an Outline wiki page (done https://doc.jonquetlab.lirmm.fr/share/0c8efcf2-601c-46c9-9137-08186086ecab)

Release

• v.3.0.0 https://gite.lirmm.fr/jonquetlab/ontoportal_deploy_scripts/-/releases/v3.0.0

[syphax-bouazzouni]

Stay to do :

• The Deployment scripts of ncbo_annotator, owlapi_wrapper, bubastis, ... and others (will be done on need)
• Deployment script for the configurations of the servers (Apache, Nginx, Tomcat)
• Scritpts to update the appliance dependencies (if possible), like ruby version, SOLR, redis, ....