2022-Q2-Release plan

[syphax-bouazzouni]

This issue is a description of the main contributions and changes brought by the 2022 Release, it has for purpose to list and fellow the developments progression of the features through this cycle.

Timeline

• Started: May 2022
• Ends: August 2022

New features

• Enhance the portal to support SKOS #262
• update ontology edit/new view ui ontoportal-lirmm/bioportal_web_ui#67
• Merge to the upsteam all the components (03/2022) #234
• SSSOM loader #292
• Update how the ontology-level attributes are extracted at the process time #293

Content fixes

• CO pull location update each day #167
• 0ntologies diagnostics (January 2022) #192
• Mise à jour de TAXREF-LD #218
• AGROVOC metadata can't be updated #286
• enable pullLocation to Agrovoc #251
• AGROVOC latest version does not have skos:hasTopConcept #280

Bug fixes

• See the state of our tests #237
• Server down error (4store) ontoportal-lirmm/bioportal_web_ui#8
• Search test done is inconsistent as it test deprecated or multilingual classes that are not indexed #223
• Memory usage and Turtle inserting at the ressource parsing ontoportal-lirmm/ontologies_linked_data#15
• a bad url is given for aliased attributes in @context ontoportal-lirmm/goo#1
• @context synonym is not in SKOS ontoportal-lirmm/ontologies_linked_data#26
• Need to include the list of ontologies in a group in the API repsonse ontoportal-lirmm/ontologies_api#12
• The slice API endpoint does not work for specific slice ontoportal-lirmm/ontologies_api#13
• include=all is not showing the views in the ontology endpoints ontoportal-lirmm/ontologies_api#17
• a bad url is given for aliased attributes in @context ontoportal-lirmm/goo#1
• no mapping found ontoportal-lirmm/bioportal_web_ui#77
• mapping bug after code merging with upstream ontoportal-lirmm/bioportal_web_ui#80
• « desactivate » O’FAIRe for AGROVOC for the moment. ontoportal-lirmm/bioportal_web_ui#79
• Problem to edit/update "main" ontology submission when a view is created #269
• Update how the ontology IRI is extracted ontoportal-lirmm/ontologies_linked_data#35
• AGROVOC classes tab is not working ontoportal-lirmm/bioportal_web_ui#78
• Fix the submission form sending empty string when nothing is set instead of nil or empty arrays ontoportal-lirmm/bioportal_web_ui#89
• local:local metdata bug value ontoportal-lirmm/ontologies_linked_data#40
• AGROVOC submissions api endpoint is not responding  #271
• Analytics not working  #267
• Get my metadata back returns "undefined" for ontologies without URI #116
• Error message for a view creation #117
• Optimize GOO for ressource that have a lot of attribute as list #289

Devops

• Enhance deployment scripts #214
• Implement a development environment for each projects #144
• Memory usage and Turtle inserting at the ressource parsing ontoportal-lirmm/ontologies_linked_data#15
• Add a script to import an ontology and its latest_submission from another portal ncbo/ncbo_cron#57
• Add a script to pull a new version of an ontology on demand ncbo/ncbo_cron#59

Documentation

• AgroPortal documentation consolidation and new documentation #162
• change the name of the documentation repo to project-management  #256

Linked pull requests (Our contributions to the ontoportal project)

• Refactor: Update rails to version 7.0 ncbo/bioportal_web_ui#201
• Feature: Append new submission data by chunks to the triple store ncbo/goo#122
• Refactor: Optimize the generated SPARQL queries ncbo/goo#124
• Add optional unions with bind query clause ncbo/sparql-client#7
• Add a script to import an ontology and its latest_submission from another portal ncbo/ncbo_cron#57
• Save and copy Ontology IRI of parsed ontologies  ncbo/owlapi_wrapper#17
• Feature: extract ontology URI automatically in submissions process ncbo/ontologies_linked_data#153
• Feature: add a bulk loader for rest mapping / SSSOM integration  ncbo/ontologies_linked_data#154
• Add a script to pull a new version of an ontology on demand ncbo/ncbo_cron#59
• Style mappings page ncbo/bioportal_web_ui#209
• Refactor: extract replace rest_url_prefix to id_url_prefix and and vice versa methods ncbo/ontologies_linked_data#155
• Fix: bug in the get_rest_mapping method ncbo/ontologies_linked_data#156
• Small code refactor to reuse replace url prefix ncbo/ontologies_api#100
• Fix: Return http delete, batch and patch responses ncbo/ontologies_api_ruby_client#13
• Refactor: Centralise escaping and unescaping urls / URI.escape obsolete warning on Ruby 2.7+ ncbo/bioportal_web_ui#217
• Update linear gradient outdated syntax ncbo/bioportal_web_ui#218