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v0.2.12
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@ryanlayer ryanlayer released this 15 Mar 15:57
· 110 commits to master since this release
0.2.12
3a13110

In general, this version should be more robust to BAMs with funny CIGAR strings and lumpyexpress also be more robust.

Here is a summary of the changes since 0.2.11.

  • Enable BAM streaming to bamfilterrg for samtools (chapmanb)
  • Fix for streaming to pysam in bamfilterrg (chapmanb)
  • fix mem leaks
  • add cnvnator to bedpe
  • fix issue with zero len read
  • use gawk instead of awk, since some versions of awk do not support i=1;i<=k;++i style for loops
  • many fixes to lsort and lmerge
  • Add translocations to BEDPE
  • get rid of -M in lumpyexpress
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