Update speciate.R #274
Workflow file for this run
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# NOTE: This workflow is overkill for most R packages | |
# check-standard.yaml is likely a better choice | |
# usethis::use_github_action("check-standard") will install it. | |
# | |
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
push: | |
branches: | |
- main | |
- master | |
pull_request: | |
branches: | |
- main | |
- master | |
name: brazil_bu_chem | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
# - {os: windows-latest, r: 'release'} | |
- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-r@v1 | |
id: install-r | |
with: | |
r-version: ${{ matrix.config.r }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
- uses: r-lib/actions/setup-pandoc@v1 | |
- name: Install pak and query dependencies | |
run: | | |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | |
saveRDS(pak::pkg_deps_tree("local::.", dependencies = TRUE), ".github/r-depends.rds") | |
shell: Rscript {0} | |
- name: Cache R packages | |
uses: actions/cache@v2 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | |
restore-keys: ${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | |
- name: Install system dependencies | |
if: runner.os == 'Linux' | |
run: | | |
Rscript -e 'pak::local_system_requirements(execute = TRUE)' | |
sudo apt-get install libgit2-dev | |
- name: Install dependencies | |
run: | | |
pak::local_install_dev_deps(upgrade = TRUE) | |
pak::pkg_install("rcmdcheck") | |
shell: Rscript {0} | |
- name: Run project brazil_bu_chems | |
run: | | |
options(width = 100) | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
install.packages(c("ggplot2", "readxl", "remotes")) | |
remotes::install_github("atmoschem/eixport") | |
remotes::install_github("atmoschem/vein") | |
library(vein) | |
get_project("teste", "brazil_bu_chem") | |
setwd("teste") | |
source("main.R") | |
shell: Rscript {0} |