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Update manta to include convertInversion.py and denovo_scoring.py #31617

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merged 3 commits into from
May 20, 2022
Merged

Update manta to include convertInversion.py and denovo_scoring.py #31617

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286e8ab
Update manta to include convertInversion.py and denovo_scoring.py
jemunro Nov 19, 2021
bf021cb
Update meta.yaml
cbrueffer May 20, 2022
869799b
Merge branch 'master' into manta
cbrueffer May 20, 2022
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2 changes: 2 additions & 0 deletions recipes/manta/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -9,3 +9,5 @@ cp -r * $outdir
rm -rf $outdir/share/demo
sed -i.bak 's/__file__/os.path.realpath(__file__)/' $outdir/bin/configManta.py
ln -s $outdir/bin/configManta.py $PREFIX/bin
ln -s $outdir/libexec/convertInversion.py $PREFIX/bin
ln -s $outdir/libexec/denovo_scoring.py $PREFIX/bin
9 changes: 7 additions & 2 deletions recipes/manta/meta.yaml
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Expand Up @@ -3,20 +3,25 @@
package:
name: manta
version: '{{ version }}'

source:
url: https://github.com/Illumina/manta/releases/download/v{{ version }}/manta-{{ version }}.centos6_x86_64.tar.bz2
sha256: ae19b1b934cf5bb605dfb58b29e8e2b843cb469ec5ff12441ca3d9d39179abf4

build:
number: 1
number: 2

requirements:
run:
- python <3

test:
commands:
- configManta.py -h

about:
home: https://github.com/Illumina/manta
license: GPLv3
license: GPL-3.0-only
summary: Structural variant and indel caller for mapped sequencing data

extra:
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