initial fix to biothings/biothings_explorer#563; update the data file…

…names and directories
biothings · Mar 16, 2023 · cfe00ec · cfe00ec
1 parent 81712bf
commit cfe00ec
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Showing 3 changed files with 235 additions and 157 deletions.
diff --git a/manifest.json b/manifest.json
@@ -7,14 +7,15 @@
     },
     "dumper" : {
         "data_url" : [
-            "http://localhost:8080/dataupload/mysrc/semmeddb/semmedVER43_2022_R_PREDICATION_clean_pyarrow_snappy.parquet",
-            "http://localhost:8080/dataupload/mysrc/semmeddb/semmedVER43_2022_R_PREDICATION.csv",
-            "http://localhost:8080/dataupload/mysrc/semmeddb/MRCUI.RRF",
-            "http://localhost:8080/dataupload/mysrc/semmeddb/UMLS_CUI_Semtype.tsv",
-            "http://localhost:8080/dataupload/mysrc/semmeddb/semmedVER43_2022_R_PREDICATION_NodeNorm.pickle",
-            "https://lhncbc.nlm.nih.gov/ii/tools/MetaMap/Docs/SemanticTypes_2018AB.txt"
+            "http://localhost:8080/dataupload/mysrc/semmeddb/semmedVER43_2023_R_SENTENCE.116080.csv",
+            "http://localhost:8080/dataupload/mysrc/semmeddb/semmedVER43_2023_R_PREDICATION.116080.csv",
+
+            "https://lhncbc.nlm.nih.gov/ii/tools/MetaMap/Docs/SemanticTypes_2018AB.txt",
+            "http://localhost:8080/dataupload/mysrc/semmeddb/UMLS_CUI_Semtype_2022AB.tsv",
+
+            "http://localhost:8080/dataupload/mysrc/semmeddb/2022AB.tar.gz"
         ],
-        "uncompress" : false,
+        "uncompress" : true,
         "release" : "version:get_release"
     },
     "uploader" : {

diff --git a/mapping.py b/mapping.py
@@ -11,6 +11,9 @@ def semmeddb_prediction_mapping(cls):
         "pmid": {
             "type": "integer"
         },
+        "sentence": {
+            "type": "text"
+        },
         "subject": {
             "properties": {
                 "umls": {