Analysis outline

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Michael Smallegan edited this page Mar 29, 2020 · 1 revision

01_consensus_peaks

02_global_clustering

count_based_clustering.Rmd (bam files)
peak_based_clustering.Rmd (consensus peak files)

03_peak_feature_intersect

subset_peaks_by_feature_type.Rmd
permutation_test_by_feature_type.Rmd

04_correlation_with_expression

retrieve_expression.Rmd
tf_binding_vs_expression.Rmd

05_feature_clustering

feature_based_clustering.Rmd
clustering_per_feature_type.Rmd
promoter_profile.Rmd

06_repeat_analysis

(~)

Shares/rinn_class/data/

#https://www.lncrna.io/teaching

(~)

http://lncRNA.io