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First major release v1.0.0
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@burtonrj burtonrj released this 09 Nov 13:27
v1.0.0
c02556a

Version 1.0.0

This is the first major release of CytoPy following the early release of v0.0.1 and updated in v0.0.5 and v0.1.0. This first major release includes fundamental changes to data management and therefore is not backward compatible with previous versions.

Improvements in the new version are:

  • Dis-coupling of single cell data with the MongoDB database, allowing for easy migration of large data stores to external drives, cloud drives, etc
  • Redesign of the autonomous gating system with a completely algorithm agnostic focus; the user can access any Scikit-learn algorithm for the purposes of gating
  • Improvements to the similarity matrix and the use of a fast convolution based kernel density estimation function (KDEpy) to reduce compute time
  • Expansion of supervised classification to provide access to any Scikit-Learn classifier or Keras model
  • Expansion of high-dimensional clustering to provide access to any Scikit-Learn model from the cluster or mixture modules. Improved access to FlowSOM algorithm
  • Simplification of data storage for clusters improving the ability to retrieve statistics in the feature_extraction module
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