MAINT: lint #29
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| name: Test and lint | |
| on: | |
| pull_request: | |
| branches: ["main"] | |
| push: | |
| branches: ["main"] | |
| jobs: | |
| build-and-test-qiime2-amplicon-2024-10: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-13] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: q2-boots-qiime2-amplicon-2024.10 | |
| environment-file: environments/q2-boots-qiime2-amplicon-2024.10.yml | |
| auto-activate-base: false | |
| - name: Install plugin | |
| shell: bash -l {0} | |
| run: make install | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: make test | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout source | |
| uses: actions/checkout@v3 | |
| - name: set up python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -q https://github.com/qiime2/q2lint/archive/master.zip | |
| pip install -q flake8 | |
| - name: run flake8 | |
| run: flake8 | |
| - name: run q2lint | |
| run: q2lint |