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README & guix-run container runner #391

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README & guix-run container runner #391

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1678dc0
README: hopefully made intro slightly easier to digest
pjotrp May 29, 2021
3c23576
.guix-run: Starts a minimal guix container for running schema-salad-tool
pjotrp May 29, 2021
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18 changes: 18 additions & 0 deletions .guix-run
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#! /bin/sh
#
# This script sets up a Guix container. Make sure guix is in the path
# - after installing Guix (on Debian).
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Cool! Can you add a GitHub Action to test this?

#
# Note that pyshex etc are part of the guix-bioinformatics channel at
#
# https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics

env GUIX_PACKAGE_PATH=~/guix-bioinformatics/ guix environment -C guix --ad-hoc git python python-pyyaml python-pycurl python-magic nss-certs python-pyshex --network openssl python-schema-salad python-pytest which less vim python-toml python-iniconfig python-tox python-mypy python-pylint

# Once in the shell you can do
# --- run tests (takes 1 minute, skips lint and mypy)
# tox
# --- install and run
# python3 setup.py install --user
# ~/.local/bin/schema-salad-tool --help
#