Ion variables can not be set via CONSTANT block (compatibility with u…

…pcoming neuron release) (#6) * Ion variables can not be set via CONSTANT block (upcoming neuron release) * Setting ionic variable like `cao`` in CONSTANT block had no effect See neuronsimulator/nrn#1955 * This will be an error in future neuron v9 and with the latest neuron-nightly pypi package. * As setting cao from MOD file had no effect, simply uncomment this (?) * fix missing declaration of cao and remove CONSTANT block
dbbs-lab · Sep 23, 2022 · 4edbf97 · 4edbf97
1 parent c4386fe
commit 4edbf97
Show file tree

Hide file tree

Showing 4 changed files with 5 additions and 9 deletions.
diff --git a/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__0.mod b/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__0.mod
@@ -97,12 +97,11 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)	
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance

diff --git a/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__CAM.mod b/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__CAM.mod
@@ -128,15 +128,14 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)
 	nr2ai  (mM)
 	nr2bi  (mM)
 	icazz (nA)
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance

diff --git a/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__CAM_GoC.mod b/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__CAM_GoC.mod
@@ -120,13 +120,12 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)	
         icazz (nA)
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance

diff --git a/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__CR.mod b/dbbs_mod_collection/mod/glia__dbbs_mod_collection__cdp5__CR.mod
@@ -98,12 +98,11 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)	
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance
@@ -304,4 +303,4 @@ FUNCTION ssDMNPE() (mM) {
 
 FUNCTION ssDMNPEca() (mM) {
 	ssDMNPEca = DMNPEnull/(1+(c2/(c1*cainull)))
-}
+}