Actionable active actions acting actively (#874)

* give actions another try * wrong docs? * ok * hmm * WTF * ah, we CAN give a path * hmm * actions everywhere * foo * artifacts
deeptools · Sep 18, 2019 · 07a821b · 07a821b
1 parent f0baf64
commit 07a821b
Showing 1 changed file with 12 additions and 52 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -6,56 +6,32 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v1
-    - name: Setup conda
-      run: |
-        curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh
-        bash miniconda.sh -b -p $HOME/miniconda
-        export PATH="$HOME/miniconda/bin:$PATH"
-        hash -r
-        conda config --set always_yes yes --set changeps1 no
-    - name: create env
-      run: |
-        export PATH=$HOME/miniconda/bin:$PATH
-        conda create -n foo -q --yes -c conda-forge -c bioconda python=3.7 numpy scipy matplotlib==3.1.1 nose flake8 plotly pysam pyBigWig py2bit deeptoolsintervals
-    - name: install deeptools
-      run: |
-        export PATH=$HOME/miniconda/bin:$PATH
-        source activate foo
-        python -m pip install . --no-deps --ignore-installed -vvv
+    - uses: "dpryan79/github-actions/@master"
     - name: PEP8
       run: |
-        export PATH=$HOME/miniconda/bin:$PATH
         source activate foo
         flake8 . --exclude=.venv,.build,build --ignore=E501,F403,E402,F999,F405,E722,W504,W605
     - name: Test deepTools
       run: |
-        export PATH=$HOME/miniconda/bin:$PATH
         source activate foo
         nosetests --with-doctest -sv deeptools
+    - name: make an artifact
+      run: |
+        source activate foo
+        rm -f dist/*
+        python setup.py sdist
+    - uses: actions/upload-artifact@master
+      with:
+        name: "Dist files"
+        path: "dist"
   build-osx:
     name: Test on OSX
     runs-on: macOS-latest
     steps:
     - uses: actions/checkout@v1
-    - name: Setup conda
-      run: |
-        curl https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -o miniconda.sh
-        bash miniconda.sh -b -p $HOME/miniconda
-        export PATH="$HOME/miniconda/bin:$PATH"
-        hash -r
-        conda config --set always_yes yes --set changeps1 no
-    - name: create env
-      run: |
-        export PATH=$HOME/miniconda/bin:$PATH
-        conda create -n foo -q --yes -c conda-forge -c bioconda python=3.7 numpy scipy matplotlib==3.1.1 nose flake8 plotly pysam pyBigWig py2bit deeptoolsintervals
-    - name: install deeptools
-      run: |
-        export PATH=$HOME/miniconda/bin:$PATH
-        source activate foo
-        python -m pip install . --no-deps --ignore-installed -vvv
+    - uses: "dpryan79/github-actions/@master"
     - name: Test deepTools
       run: |
-        export PATH=$HOME/miniconda/bin:$PATH
         source activate foo
         nosetests --with-doctest -sv deeptools
   planemo:
@@ -67,24 +43,8 @@ jobs:
         chunk: [1, 2, 3]
     steps:
     - uses: actions/checkout@v1
-    - name: Setup conda
-      run: |
-        curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh
-        bash miniconda.sh -b -p $HOME/miniconda
-        export PATH="$HOME/miniconda/bin:$PATH"
-        hash -r
-        conda config --set always_yes yes --set changeps1 no
-    - name: create env
-      run: |
-        export PATH=$HOME/miniconda/bin:$PATH
-        conda create -n foo -q --yes -c conda-forge -c bioconda python=3.7 numpy scipy matplotlib==3.1.1 nose flake8 plotly pysam pyBigWig py2bit deeptoolsintervals planemo samtools
-    - name: install deeptools
-      run: |
-        export PATH=$HOME/miniconda/bin:$PATH
-        source activate foo
-        python -m pip install . --no-deps --ignore-installed -vvv
+    - uses: "dpryan79/github-actions/@master"
     - name: planemo
       run: |
-        export PATH=$HOME/miniconda/bin:$PATH
         source activate foo
         ./.planemo.sh ${{ matrix.chunk }}