Start fixing #700. The regions sent to deepBlue weren't adjusted for …

…-b and -a before.
deeptools · Jun 8, 2018 · 70c07b4 · 70c07b4
1 parent 2122179
commit 70c07b4
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/CHANGES.txt b/CHANGES.txt
@@ -6,6 +6,7 @@
  * `computeMatrixOperations` can now be used to change sample and group names.
  * `computeMatrixOperations` can now filter rows by minimum and/or maximum value.
  * `--maxThreshold` and `--minThreshold` are now more consistently honoured. (#702)
+ * Fixed region handling when using files on deepBlue (#700)
 
 3.0.2
 

diff --git a/deeptools/deepBlue.py b/deeptools/deepBlue.py
@@ -95,8 +95,8 @@ def makeRegions(BED, args):
     o = []
     extend = 0
     # The before/after stuff is specific to computeMatrix
-    if "beforeRegionsStartLength" in args:
-        extend = max(args.beforeRegionsStartLength, args.afterRegionsStartLength)
+    if "beforeRegionStartLength" in args:
+        extend = max(args.beforeRegionStartLength, args.afterRegionStartLength)
     for chrom in itree.chroms:
         regs = itree.findOverlaps(chrom, 0, 4294967295)  # bigWig files use 32 bit coordinates
         for reg in regs: