--yMax an --yMin as vector

[apastore]

Is possible to set --yMax and --yMin as vectors as for the --zMax and --zMin?

Thanks!

[vivekbhr]

@apastore No. --yMin and --yMax only take one argument.

[apastore]

yes .. would not be useful when comparing tracks with different signal intensities ?

[vivekbhr]

Usually comparing different intensities are solved by changing the --zMin and --zMax , for visualization on heatmap. Do you want to to modify the profile plot?

[dpryan79]

This is presumably for the profiles on top of the heatmaps (or directly in plotProfile). If we're going to allow different Z coloring scales, we might as well do it for the profile plots too. I could see this being useful when DNA methylation is incorporated into plots.

[apastore]

Yes exactly! This is for the profile plot on the top of heatmap. I work with many different kind of tracks, including chip, atac, and rna. And every marker has it own dynamic range. (Maybe also the possibility to log some of the plot would also help sometimes) Thanks!

…

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On Mar 6, 2017, at 5:53 AM, Devon Ryan ***@***.***> wrote: This is presumably for the profiles on top of the heatmaps (or directly in plotProfile). If we're going to allow different Z coloring scales, we might as well do it for the profile plots too. I could see this being useful when DNA methylation is incorporated into plots. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

[dpryan79]

The feature/implement487 now implements this in plotProfile and plotHeatmap. The former generally looks nicer IMO. This is all a bit hacky, since matplotlib doesn't want to space things out nicely by default and forcing it to do so can result in the heatmaps not perfectly aligning with the profiles.

[dpryan79]

This is now implemented in the develop branch, which will become the 2.5.0 release at the end of the month.