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Feature Request: Adding "label" option to ComputeMatrix function #523

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itsvenu opened this issue Apr 28, 2017 · 2 comments
Closed

Feature Request: Adding "label" option to ComputeMatrix function #523

itsvenu opened this issue Apr 28, 2017 · 2 comments
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@itsvenu
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itsvenu commented Apr 28, 2017

Hi,

I've been using computeMatrix function, it's great. I was wondering whether it would be possible to add label option to this function to label the samples provided instead of original filenames. Sometimes long filenames are messing up the plot. Though, samplesLabel exists with plotProfile, it is sometimes difficult to use computeMatrix result at a later point and also with other programs.

example

~/myTools/deepTools/bin/computeMatrix reference-point --referencePoint center -b 4000 -a 4000 -R promoters.bed -S my_file_name_1.bw my_file_name_2.bw --label mf1 mf2 --skipZeros -o matrix_result.gz --outFileSortedRegions regions_sorted.txt

Thank you.

dpryan79 added a commit that referenced this issue Apr 28, 2017
…alaxy, where I think it should default to the history item names.
@dpryan79
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Thanks for the reminder, I'd already forgotten about this!

Can you try the feature/implement523 branch? I just added this in but it'd be nice to have someone other than me test it :)

@dpryan79 dpryan79 self-assigned this Apr 28, 2017
@dpryan79 dpryan79 added this to the 2.5.1 milestone Apr 28, 2017
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dpryan79 commented May 5, 2017

I've merged this into the develop branch, since I'd like to get 2.5.1 out on the 12th.

@dpryan79 dpryan79 closed this as completed May 5, 2017
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