Add --sortRegions keep in plotHeatmap?

[endrebak]

If you use --sortRegions no in --plotHeatmap, is the sort order of the matrix then preserved? Even if this is so, you might want to add a dummy keep option to --sortRegions or add something about this in the docs.

My commands/what I want:

computeMatrix -R sort_order.bed --sortRegions keep
plotHeatmap --sortRegions no # I want to keep the sort order from the last step

[dpryan79]

—sortRegions no does what you want, though I agree that adding a “keep” option for the same thing would be a good idea.

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On 30. Oct 2017, at 08:12, Endre Bakken Stovner ***@***.***> wrote: If you use --sortRegions no in --plotHeatmap, is the sort order of the matrix then preserved? Even if this is so, you might want to add a dummy keep option to --sortRegions or add something about this in the docs. My commands/what I want: computeMatrix -R sort_order.bed --sortRegions keep plotHeatmap --sortRegions no # I want to keep the sort order from the last step — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.

[dpryan79]

This is now implemented in develop and will be present in deepTools 3.0