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@dpryan79 dpryan79 released this 29 May 08:24
· 301 commits to master since this release
3.3.0
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Learn about vigilant mode.
  • plotCoverage now has a --BED option, to restrict plots and output to apply to a specific set of regions given by a BED or GTF file or files (issue #829).
  • plotCoverage now has a --DepthSummary option, which produces a summary similar to GATK's DepthOfCoverage (issue #828).
  • plotCoverage is now able to compute coverage metrics for arbitrary coverage thresholds using multiples of the -ct option (e.g., -ct 0 -ct 10 -ct 20 -ct 30).
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